Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MSG entry

There are 6 chains in PDB entry 5MSG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 0	ILE 723
B	GLY 0	ILE 749
C	GLY 0	LYS 740
M	A 1	C 4
R	U 1	U 18
V	A 1	G 14

There are 98 helices in PDB entry 5MSG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	0	9	Right-handed alpha
Helix 2	AA2	A	10	24	Right-handed alpha
Helix 3	AA3	A	31	51	Right-handed alpha
Helix 4	AA4	A	84	100	Right-handed alpha
Helix 5	AA5	A	127	140	Right-handed alpha
Helix 6	AA6	A	163	184	Right-handed alpha
Helix 7	AA7	A	186	192	Right-handed alpha
Helix 8	AA8	A	205	215	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	237	246	Right-handed alpha
Helix 11	AB2	A	258	262	Right-handed 310
Helix 12	AB3	A	267	271	Right-handed 310
Helix 13	AB4	A	301	313	Right-handed alpha
Helix 14	AB5	A	313	318	Right-handed alpha
Helix 15	AB6	A	332	349	Right-handed alpha
Helix 16	AB7	A	361	367	Right-handed alpha
Helix 17	AB8	A	376	383	Right-handed alpha
Helix 18	AB9	A	400	412	Right-handed alpha
Helix 19	AC1	A	429	448	Right-handed alpha
Helix 20	AC2	A	449	472	Right-handed alpha
Helix 21	AC3	A	529	533	Right-handed 310
Helix 22	AC4	A	564	572	Right-handed alpha
Helix 23	AC5	A	575	596	Right-handed alpha
Helix 24	AC6	A	599	605	Right-handed alpha
Helix 25	AC7	A	629	646	Right-handed alpha
Helix 26	AC8	A	648	671	Right-handed alpha
Helix 27	AC9	A	678	688	Right-handed alpha
Helix 28	AD1	A	693	718	Right-handed alpha
Helix 29	AD2	B	7	12	Right-handed alpha
Helix 30	AD3	B	17	22	Right-handed 310
Helix 31	AD4	B	35	49	Right-handed alpha
Helix 32	AD5	B	84	99	Right-handed alpha
Helix 33	AD6	B	102	117	Right-handed alpha
Helix 34	AD7	B	119	125	Right-handed 310
Helix 35	AD8	B	139	153	Right-handed alpha
Helix 36	AD9	B	156	161	Right-handed 310
Helix 37	AE1	B	162	174	Right-handed alpha
Helix 38	AE2	B	214	222	Right-handed alpha
Helix 39	AE3	B	245	266	Right-handed alpha
Helix 40	AE4	B	274	292	Right-handed alpha
Helix 41	AE5	B	308	313	Right-handed alpha
Helix 42	AE6	B	314	326	Right-handed alpha
Helix 43	AE7	B	330	338	Right-handed alpha
Helix 44	AE8	B	338	346	Right-handed alpha
Helix 45	AE9	B	371	375	Right-handed 310
Helix 46	AF1	B	382	393	Right-handed alpha
Helix 47	AF2	B	414	426	Right-handed alpha
Helix 48	AF3	B	454	472	Right-handed alpha
Helix 49	AF4	B	507	512	Right-handed 310
Helix 50	AF5	B	517	536	Right-handed alpha
Helix 51	AF6	B	539	558	Right-handed alpha
Helix 52	AF7	B	569	582	Right-handed alpha
Helix 53	AF8	B	584	588	Right-handed 310
Helix 54	AF9	B	589	593	Right-handed 310
Helix 55	AG1	B	599	603	Right-handed 310
Helix 56	AG2	B	606	612	Right-handed alpha
Helix 57	AG3	B	613	615	Right-handed 310
Helix 58	AG4	B	616	624	Right-handed alpha
Helix 59	AG5	B	635	640	Right-handed alpha
Helix 60	AG6	B	670	675	Right-handed 310
Helix 61	AG7	B	676	678	Right-handed 310
Helix 62	AG8	B	679	699	Right-handed alpha
Helix 63	AG9	B	700	703	Right-handed 310
Helix 64	AH1	B	712	732	Right-handed alpha
Helix 65	AH2	B	735	749	Right-handed alpha
Helix 66	AH3	C	1	15	Right-handed alpha
Helix 67	AH4	C	15	25	Right-handed alpha
Helix 68	AH5	C	29	35	Right-handed alpha
Helix 69	AH6	C	44	53	Right-handed alpha
Helix 70	AH7	C	64	70	Right-handed alpha
Helix 71	AH8	C	94	105	Right-handed alpha
Helix 72	AH9	C	112	117	Right-handed alpha
Helix 73	AI1	C	117	129	Right-handed alpha
Helix 74	AI2	C	157	170	Right-handed alpha
Helix 75	AI3	C	179	184	Right-handed alpha
Helix 76	AI4	C	184	195	Right-handed alpha
Helix 77	AI5	C	201	214	Right-handed alpha
Helix 78	AI6	C	227	232	Right-handed alpha
Helix 79	AI7	C	233	236	Right-handed 310
Helix 80	AI8	C	253	273	Right-handed alpha
Helix 81	AI9	C	277	287	Right-handed alpha
Helix 82	AJ1	C	296	303	Right-handed alpha
Helix 83	AJ2	C	307	318	Right-handed alpha
Helix 84	AJ3	C	392	407	Right-handed alpha
Helix 85	AJ4	C	409	415	Right-handed alpha
Helix 86	AJ5	C	431	443	Right-handed alpha
Helix 87	AJ6	C	444	452	Right-handed alpha
Helix 88	AJ7	C	515	519	Right-handed 310
Helix 89	AJ8	C	542	564	Right-handed alpha
Helix 90	AJ9	C	565	567	Right-handed 310
Helix 91	AK1	C	575	584	Right-handed alpha
Helix 92	AK2	C	589	607	Right-handed alpha
Helix 93	AK3	C	611	619	Right-handed alpha
Helix 94	AK4	C	620	623	Right-handed 310
Helix 95	AK5	C	682	686	Right-handed 310
Helix 96	AK6	C	690	694	Right-handed 310
Helix 97	AK7	C	705	709	Right-handed 310
Helix 98	AK8	C	713	719	Right-handed alpha

There are 29 sheets in PDB entry 5MSG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	52	54	first strand
Strand 2	A	60	62	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	112	first strand
Strand 2	A	117	124	anti-parallel
Strand 3	A	143	149	parallel
Strand 4	A	155	156	anti-parallel

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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	435	438	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	255	256	first strand
Strand 2	A	675	676	anti-parallel
Strand 3	B	482	485	anti-parallel
Strand 4	B	298	303	anti-parallel
Strand 5	B	445	452	anti-parallel
Strand 6	B	441	442	anti-parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	513	522	anti-parallel
Strand 4	A	550	563	anti-parallel
Strand 5	A	537	545	anti-parallel
Strand 6	A	323	326	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	293	294	first strand
Strand 2	A	492	502	anti-parallel
Strand 3	A	477	487	anti-parallel
Strand 4	A	416	417	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	373	374	first strand
Strand 2	B	364	369	parallel
Strand 3	B	354	359	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	624	628	first strand
Strand 2	A	614	619	anti-parallel
Strand 3	B	2	3	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	54	57	first strand
Strand 2	B	64	67	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	130	first strand
Strand 2	B	135	138	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	178	191	first strand
Strand 2	B	200	213	anti-parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	240	244	first strand
Strand 2	B	223	228	anti-parallel
Strand 3	B	348	350	parallel
Strand 4	B	401	403	anti-parallel
Strand 5	B	396	397	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	488	491	first strand
Strand 2	B	494	497	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	641	644	first strand
Strand 2	B	652	655	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	666	667	first strand
Strand 2	C	59	60	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	C	77	78	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	80	84	first strand
Strand 2	C	91	93	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	131	137	first strand
Strand 2	C	242	247	anti-parallel
Strand 3	C	238	239	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	143	148	first strand
Strand 2	C	217	222	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	294	295	first strand
Strand 2	C	289	291	anti-parallel
Strand 3	C	530	532	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	326	327	first strand
Strand 2	C	330	331	anti-parallel

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There are 6 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	334	336	first strand
Strand 2	C	363	365	anti-parallel
Strand 3	C	376	379	anti-parallel
Strand 4	C	382	388	anti-parallel
Strand 5	C	480	482	parallel
Strand 6	C	462	463	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	347	first strand
Strand 2	C	353	360	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	368	369	first strand
Strand 2	C	372	373	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	453	455	first strand
Strand 2	C	474	476	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	498	499	first strand
Strand 2	C	505	506	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	641	first strand
Strand 2	C	649	651	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	660	662	first strand
Strand 2	C	667	670	anti-parallel
Strand 3	C	673	676	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	699	702	first strand
Strand 2	C	735	739	anti-parallel
Strand 3	C	725	729	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MSG

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSG