Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSH


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MSH entry

There are 2 chains in PDB entry 5MSH (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 1SER 183
B
 MET 1LEU 369
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 5MSH. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
54 61Right-handed alpha
Helix 2
AA2
A
82 86Right-handed 310
Helix 3
AA3
A
137 141Right-handed 310
Helix 4
AA4
B
4 8Right-handed 310
Helix 5
AA5
B
20 22Right-handed 310
Helix 6
AA6
B
48 52Right-handed 310
Helix 7
AA7
B
58 65Right-handed alpha
Helix 8
AA8
B
103 108Right-handed alpha
Helix 9
AA9
B
137 144Right-handed alpha
Helix 10
AB1
B
230 237Right-handed alpha
Helix 11
AB2
B
277 281Right-handed 310
Helix 12
AB3
B
300 304Right-handed 310
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There are 9 sheets in PDB entry 5MSH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
63 77anti-parallel
Strand 5
A
115 124anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
48 51first strand
Strand 2
A
12 18anti-parallel
Strand 3
A
160 165anti-parallel
Strand 4
A
63 77anti-parallel
Strand 5
A
170 176anti-parallel
Strand 6
B
95 96parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
38 41first strand
Strand 2
A
28 33anti-parallel
Strand 3
A
145 150anti-parallel
Strand 4
A
90 95anti-parallel
Strand 5
A
106 110anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
180 181first strand
Strand 2
B
226 228anti-parallel
Strand 3
B
221 222anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
24 32first strand
Strand 2
B
164 173anti-parallel
Strand 3
B
71 77anti-parallel
Strand 4
B
122 127anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
40 46first strand
Strand 2
B
147 154anti-parallel
Strand 3
B
87 93anti-parallel
Strand 4
B
111 115anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 202first strand
Strand 2
B
342 357anti-parallel
Strand 3
B
241 252anti-parallel
Strand 4
B
294 299anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
187 202first strand
Strand 2
B
342 357anti-parallel
Strand 3
B
241 252anti-parallel
Strand 4
B
308 309anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 214first strand
Strand 2
B
324 330anti-parallel
Strand 3
B
262 268anti-parallel
Strand 4
B
284 286anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il