Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSJ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MSJ entry

There are 7 chains in PDB entry 5MSJ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LEU 4	GLU 243
B	ARG 5	GLU 243
C	ARG 5	GLU 243
D	HIS 7	GLU 243
E	THR 3	THR 244
F	PRO 8	ARG 241
G	VAL 6	ASP 15

There are167 helices in PDB entry 5MSJ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	9	46	Right-handed alpha
Helix 2	AA2	A	47	50	Right-handed 310
Helix 3	AA3	A	53	57	Right-handed 310
Helix 4	AA4	A	107	138	Right-handed alpha
Helix 5	AA5	A	147	191	Right-handed alpha
Helix 6	AA6	A	195	239	Right-handed alpha
Helix 7	AA7	B	7	46	Right-handed alpha
Helix 8	AA8	B	107	138	Right-handed alpha
Helix 9	AA9	B	147	191	Right-handed alpha
Helix 10	AB1	B	194	239	Right-handed alpha
Helix 11	AB2	C	7	31	Right-handed alpha
Helix 12	AB3	C	31	46	Right-handed alpha
Helix 13	AB4	C	53	58	Right-handed 310
Helix 14	AB5	C	107	138	Right-handed alpha
Helix 15	AB6	C	147	191	Right-handed alpha
Helix 16	AB7	C	195	233	Right-handed alpha
Helix 17	AB8	C	233	239	Right-handed alpha
Helix 18	AB9	D	8	46	Right-handed alpha
Helix 19	AC1	D	53	57	Right-handed 310
Helix 20	AC2	D	107	139	Right-handed alpha
Helix 21	AC3	D	147	191	Right-handed alpha
Helix 22	AC4	D	194	239	Right-handed alpha
Helix 23	AC5	E	7	46	Right-handed alpha
Helix 24	AC6	E	107	139	Right-handed alpha
Helix 25	AC7	E	147	191	Right-handed alpha
Helix 26	AC8	E	195	239	Right-handed alpha
Helix 27	AC9	F	9	46	Right-handed alpha
Helix 28	AD1	F	53	58	Right-handed 310
Helix 29	AD2	F	107	138	Right-handed alpha
Helix 30	AD3	F	147	191	Right-handed alpha
Helix 31	AD4	F	194	233	Right-handed alpha
Helix 32	AD5	F	233	239	Right-handed alpha
Helix 33	AD6	G	7	46	Right-handed alpha
Helix 34	AD7	G	107	138	Right-handed alpha
Helix 35	AD8	G	147	191	Right-handed alpha
Helix 36	AD9	G	194	239	Right-handed alpha
Helix 37	AE1	H	6	46	Right-handed alpha
Helix 38	AE2	H	53	57	Right-handed 310
Helix 39	AE3	H	107	138	Right-handed alpha
Helix 40	AE4	H	147	191	Right-handed alpha
Helix 41	AE5	H	194	239	Right-handed alpha
Helix 42	AE6	I	7	46	Right-handed alpha
Helix 43	AE7	I	53	57	Right-handed 310
Helix 44	AE8	I	107	139	Right-handed alpha
Helix 45	AE9	I	147	191	Right-handed alpha
Helix 46	AF1	I	195	233	Right-handed alpha
Helix 47	AF2	I	233	239	Right-handed alpha
Helix 48	AF3	J	7	31	Right-handed alpha
Helix 49	AF4	J	31	45	Right-handed alpha
Helix 50	AF5	J	53	58	Right-handed 310
Helix 51	AF6	J	107	139	Right-handed alpha
Helix 52	AF7	J	147	191	Right-handed alpha
Helix 53	AF8	J	195	233	Right-handed alpha
Helix 54	AF9	J	233	239	Right-handed alpha
Helix 55	AG1	K	7	46	Right-handed alpha
Helix 56	AG2	K	107	139	Right-handed alpha
Helix 57	AG3	K	147	191	Right-handed alpha
Helix 58	AG4	K	194	239	Right-handed alpha
Helix 59	AG5	L	7	31	Right-handed alpha
Helix 60	AG6	L	31	46	Right-handed alpha
Helix 61	AG7	L	107	138	Right-handed alpha
Helix 62	AG8	L	147	168	Right-handed alpha
Helix 63	AG9	L	168	191	Right-handed alpha
Helix 64	AH1	L	195	239	Right-handed alpha
Helix 65	AH2	M	8	46	Right-handed alpha
Helix 66	AH3	M	107	138	Right-handed alpha
Helix 67	AH4	M	147	191	Right-handed alpha
Helix 68	AH5	M	195	239	Right-handed alpha
Helix 69	AH6	N	7	31	Right-handed alpha
Helix 70	AH7	N	31	46	Right-handed alpha
Helix 71	AH8	N	53	58	Right-handed alpha
Helix 72	AH9	N	107	138	Right-handed alpha
Helix 73	AI1	N	147	191	Right-handed alpha
Helix 74	AI2	N	195	239	Right-handed alpha
Helix 75	AI3	O	9	46	Right-handed alpha
Helix 76	AI4	O	53	57	Right-handed 310
Helix 77	AI5	O	107	139	Right-handed alpha
Helix 78	AI6	O	147	191	Right-handed alpha
Helix 79	AI7	O	195	239	Right-handed alpha
Helix 80	AI8	P	7	31	Right-handed alpha
Helix 81	AI9	P	31	46	Right-handed alpha
Helix 82	AJ1	P	47	50	Right-handed 310
Helix 83	AJ2	P	53	57	Right-handed 310
Helix 84	AJ3	P	107	139	Right-handed alpha
Helix 85	AJ4	P	147	172	Right-handed alpha
Helix 86	AJ5	P	172	191	Right-handed alpha
Helix 87	AJ6	P	195	239	Right-handed alpha
Helix 88	AJ7	Q	7	31	Right-handed alpha
Helix 89	AJ8	Q	31	46	Right-handed alpha
Helix 90	AJ9	Q	53	57	Right-handed 310
Helix 91	AK1	Q	107	139	Right-handed alpha
Helix 92	AK2	Q	147	167	Right-handed alpha
Helix 93	AK3	Q	167	191	Right-handed alpha
Helix 94	AK4	Q	195	239	Right-handed alpha
Helix 95	AK5	R	9	31	Right-handed alpha
Helix 96	AK6	R	31	46	Right-handed alpha
Helix 97	AK7	R	53	57	Right-handed 310
Helix 98	AK8	R	107	139	Right-handed alpha
Helix 99	AK9	R	147	172	Right-handed alpha
Helix 100	AL1	R	172	191	Right-handed alpha
Helix 101	AL2	R	195	233	Right-handed alpha
Helix 102	AL3	R	233	239	Right-handed alpha
Helix 103	AL4	S	9	46	Right-handed alpha
Helix 104	AL5	S	53	57	Right-handed 310
Helix 105	AL6	S	107	139	Right-handed alpha
Helix 106	AL7	S	147	169	Right-handed alpha
Helix 107	AL8	S	169	191	Right-handed alpha
Helix 108	AL9	S	195	239	Right-handed alpha
Helix 109	AM1	T	7	31	Right-handed alpha
Helix 110	AM2	T	31	46	Right-handed alpha
Helix 111	AM3	T	107	139	Right-handed alpha
Helix 112	AM4	T	147	191	Right-handed alpha
Helix 113	AM5	T	195	239	Right-handed alpha
Helix 114	AM6	U	8	46	Right-handed alpha
Helix 115	AM7	U	53	57	Right-handed 310
Helix 116	AM8	U	67	76	Right-handed alpha
Helix 117	AM9	U	107	139	Right-handed alpha
Helix 118	AN1	U	147	191	Right-handed alpha
Helix 119	AN2	U	195	239	Right-handed alpha
Helix 120	AN3	V	9	31	Right-handed alpha
Helix 121	AN4	V	31	45	Right-handed alpha
Helix 122	AN5	V	53	57	Right-handed 310
Helix 123	AN6	V	107	138	Right-handed alpha
Helix 124	AN7	V	147	169	Right-handed alpha
Helix 125	AN8	V	169	191	Right-handed alpha
Helix 126	AN9	V	195	239	Right-handed alpha
Helix 127	AO1	W	7	46	Right-handed alpha
Helix 128	AO2	W	47	50	Right-handed 310
Helix 129	AO3	W	53	57	Right-handed 310
Helix 130	AO4	W	107	139	Right-handed alpha
Helix 131	AO5	W	147	169	Right-handed alpha
Helix 132	AO6	W	169	191	Right-handed alpha
Helix 133	AO7	W	194	239	Right-handed alpha
Helix 134	AO8	X	10	31	Right-handed alpha
Helix 135	AO9	X	31	46	Right-handed alpha
Helix 136	AP1	X	53	57	Right-handed 310
Helix 137	AP2	X	107	138	Right-handed alpha
Helix 138	AP3	X	147	191	Right-handed alpha
Helix 139	AP4	X	195	239	Right-handed alpha
Helix 140	AP5	Y	7	31	Right-handed alpha
Helix 141	AP6	Y	31	46	Right-handed alpha
Helix 142	AP7	Y	47	50	Right-handed 310
Helix 143	AP8	Y	53	57	Right-handed 310
Helix 144	AP9	Y	107	138	Right-handed alpha
Helix 145	AQ1	Y	148	172	Right-handed alpha
Helix 146	AQ2	Y	172	191	Right-handed alpha
Helix 147	AQ3	Y	195	233	Right-handed alpha
Helix 148	AQ4	Y	233	239	Right-handed alpha
Helix 149	AQ5	Z	7	31	Right-handed alpha
Helix 150	AQ6	Z	31	46	Right-handed alpha
Helix 151	AQ7	Z	54	58	Right-handed 310
Helix 152	AQ8	Z	107	139	Right-handed alpha
Helix 153	AQ9	Z	147	191	Right-handed alpha
Helix 154	AR1	Z	194	233	Right-handed alpha
Helix 155	AR2	Z	233	239	Right-handed alpha
Helix 156	AR3	a	8	31	Right-handed alpha
Helix 157	AR4	a	31	46	Right-handed alpha
Helix 158	AR5	a	53	57	Right-handed 310
Helix 159	AR6	a	107	139	Right-handed alpha
Helix 160	AR7	a	147	191	Right-handed alpha
Helix 161	AR8	a	195	239	Right-handed alpha
Helix 162	AR9	b	7	46	Right-handed alpha
Helix 163	AS1	b	47	50	Right-handed 310
Helix 164	AS2	b	53	57	Right-handed 310
Helix 165	AS3	b	107	139	Right-handed alpha
Helix 166	AS4	b	147	191	Right-handed alpha
Helix 167	AS5	b	195	239	Right-handed alpha

There are no sheets in PDB entry 5MSJ

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Analysis of interatomic Contacts of Structural Units in PDB entry: 5MSJ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSJ