Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSK


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MSK entry

There are 7 chains in PDB entry 5MSK (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 5GLU 243
B
 GLY 3LYS 245
C
 GLU 9LYS 245
D
 GLY 3LYS 241
E
 ARG 11GLY 242
F
 ARG 5GLU 243
G
 VAL 4PHE 17
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 50 helices in PDB entry 5MSK. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 10Right-handed 310
Helix 2
AA2
A
11 31Right-handed alpha
Helix 3
AA3
A
31 44Right-handed alpha
Helix 4
AA4
A
46 50Right-handed 310
Helix 5
AA5
A
53 57Right-handed 310
Helix 6
AA6
A
107 137Right-handed alpha
Helix 7
AA7
A
147 191Right-handed alpha
Helix 8
AA8
A
194 239Right-handed alpha
Helix 9
AA9
B
7 31Right-handed alpha
Helix 10
AB1
B
31 44Right-handed alpha
Helix 11
AB2
B
46 50Right-handed 310
Helix 12
AB3
B
53 57Right-handed 310
Helix 13
AB4
B
107 137Right-handed alpha
Helix 14
AB5
B
147 191Right-handed alpha
Helix 15
AB6
B
194 239Right-handed alpha
Helix 16
AB7
C
10 31Right-handed alpha
Helix 17
AB8
C
31 44Right-handed alpha
Helix 18
AB9
C
46 50Right-handed 310
Helix 19
AC1
C
53 57Right-handed 310
Helix 20
AC2
C
107 137Right-handed alpha
Helix 21
AC3
C
147 191Right-handed alpha
Helix 22
AC4
C
194 239Right-handed alpha
Helix 23
AC5
D
7 31Right-handed alpha
Helix 24
AC6
D
31 44Right-handed alpha
Helix 25
AC7
D
46 50Right-handed 310
Helix 26
AC8
D
53 57Right-handed 310
Helix 27
AC9
D
107 137Right-handed alpha
Helix 28
AD1
D
147 191Right-handed alpha
Helix 29
AD2
D
194 239Right-handed alpha
Helix 30
AD3
E
12 31Right-handed alpha
Helix 31
AD4
E
31 44Right-handed alpha
Helix 32
AD5
E
46 50Right-handed 310
Helix 33
AD6
E
53 57Right-handed 310
Helix 34
AD7
E
107 137Right-handed alpha
Helix 35
AD8
E
147 191Right-handed alpha
Helix 36
AD9
E
194 239Right-handed alpha
Helix 37
AE1
F
7 31Right-handed alpha
Helix 38
AE2
F
31 44Right-handed alpha
Helix 39
AE3
F
46 50Right-handed 310
Helix 40
AE4
F
53 57Right-handed 310
Helix 41
AE5
F
107 137Right-handed alpha
Helix 42
AE6
F
147 191Right-handed alpha
Helix 43
AE7
F
194 239Right-handed alpha
Helix 44
AE8
G
9 31Right-handed alpha
Helix 45
AE9
G
31 44Right-handed alpha
Helix 46
AF1
G
46 50Right-handed 310
Helix 47
AF2
G
53 57Right-handed 310
Helix 48
AF3
G
107 137Right-handed alpha
Helix 49
AF4
G
147 191Right-handed alpha
Helix 50
AF5
G
194 239Right-handed alpha
Back to top of page
There are no sheets in PDB entry 5MSK
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il