Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MSP entry

There is 1 chain in PDB entry 5MSP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 669LEU 1187
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 29 helices in PDB entry 5MSP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
669 683Right-handed alpha
Helix 2
AA2
A
695 699Right-handed 310
Helix 3
AA3
A
701 717Right-handed alpha
Helix 4
AA4
A
721 727Right-handed alpha
Helix 5
AA5
A
731 745Right-handed alpha
Helix 6
AA6
A
751 757Right-handed alpha
Helix 7
AA7
A
766 768Right-handed 310
Helix 8
AA8
A
769 773Right-handed 310
Helix 9
AA9
A
775 782Right-handed alpha
Helix 10
AB1
A
804 817Right-handed alpha
Helix 11
AB2
A
818 820Right-handed 310
Helix 12
AB3
A
831 843Right-handed alpha
Helix 13
AB4
A
847 861Right-handed alpha
Helix 14
AB5
A
871 876Right-handed 310
Helix 15
AB6
A
877 888Right-handed alpha
Helix 16
AB7
A
903 912Right-handed alpha
Helix 17
AB8
A
912 923Right-handed alpha
Helix 18
AB9
A
935 939Right-handed 310
Helix 19
AC1
A
943 947Right-handed 310
Helix 20
AC2
A
952 956Right-handed 310
Helix 21
AC3
A
969 989Right-handed alpha
Helix 22
AC4
A
1014 1027Right-handed alpha
Helix 23
AC5
A
1052 1066Right-handed alpha
Helix 24
AC6
A
1084 1095Right-handed alpha
Helix 25
AC7
A
1104 1118Right-handed alpha
Helix 26
AC8
A
1120 1127Right-handed alpha
Helix 27
AC9
A
1131 1136Right-handed 310
Helix 28
AD1
A
1149 1160Right-handed alpha
Helix 29
AD2
A
1171 1185Right-handed alpha
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There are 4 sheets in PDB entry 5MSP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
762 764first strand
Strand 2
A
959 961anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
862 866first strand
Strand 2
A
822 827parallel
Strand 3
A
794 798parallel
Strand 4
A
890 893parallel
Strand 5
A
930 934parallel
Strand 6
A
992 996parallel
Strand 7
A
1070 1074parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1000 1001first strand
Strand 2
A
1050 1051parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1028 1030first strand
Strand 2
A
1100 1102parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il