Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSQ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MSQ entry

There is 1 chain in PDB entry 5MSQ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 9THR 639
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 24 helices in PDB entry 5MSQ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
9 21Right-handed alpha
Helix 2
AA2
A
21 27Right-handed alpha
Helix 3
AA3
A
30 39Right-handed alpha
Helix 4
AA4
A
43 55Right-handed alpha
Helix 5
AA5
A
90 106Right-handed alpha
Helix 6
AA6
A
125 139Right-handed alpha
Helix 7
AA7
A
150 162Right-handed alpha
Helix 8
AA8
A
172 182Right-handed alpha
Helix 9
AA9
A
198 215Right-handed alpha
Helix 10
AB1
A
224 233Right-handed alpha
Helix 11
AB2
A
269 274Right-handed alpha
Helix 12
AB3
A
280 285Right-handed alpha
Helix 13
AB4
A
300 312Right-handed alpha
Helix 14
AB5
A
327 336Right-handed alpha
Helix 15
AB6
A
343 362Right-handed alpha
Helix 16
AB7
A
370 383Right-handed alpha
Helix 17
AB8
A
399 411Right-handed alpha
Helix 18
AB9
A
446 450Right-handed 310
Helix 19
AC1
A
477 485Right-handed alpha
Helix 20
AC2
A
525 533Right-handed alpha
Helix 21
AC3
A
559 564Right-handed alpha
Helix 22
AC4
A
567 586Right-handed alpha
Helix 23
AC5
A
589 593Right-handed 310
Helix 24
AC6
A
618 639Right-handed alpha
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There are 7 sheets in PDB entry 5MSQ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 89first strand
Strand 2
A
59 71anti-parallel
Strand 3
A
316 319parallel
Strand 4
A
291 294parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
141 144first strand
Strand 2
A
117 121parallel
Strand 3
A
165 168parallel
Strand 4
A
188 191parallel
Strand 5
A
220 223parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
249 255first strand
Strand 2
A
263 268anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
339 342first strand
Strand 2
A
390 394parallel
Strand 3
A
415 420parallel
Strand 4
A
424 429anti-parallel
Strand 5
A
432 433anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
438 444first strand
Strand 2
A
460 467anti-parallel
Strand 3
A
491 501anti-parallel
Strand 4
A
504 510anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
514 516first strand
Strand 2
A
522 524anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
538 544first strand
Strand 2
A
553 558anti-parallel
Strand 3
A
596 599parallel
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