Analysis of interatomic Contacts of Structural Units in PDB entry:
5MST

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MST entry

There are 2 chains in PDB entry 5MST (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 17	ALA 651
B	GLN 17	ALA 651

There are 52 helices in PDB entry 5MST. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	30	Right-handed alpha
Helix 2	AA2	A	30	36	Right-handed alpha
Helix 3	AA3	A	39	47	Right-handed alpha
Helix 4	AA4	A	52	64	Right-handed alpha
Helix 5	AA5	A	99	116	Right-handed alpha
Helix 6	AA6	A	134	148	Right-handed alpha
Helix 7	AA7	A	159	171	Right-handed alpha
Helix 8	AA8	A	181	191	Right-handed alpha
Helix 9	AA9	A	207	224	Right-handed alpha
Helix 10	AB1	A	233	242	Right-handed alpha
Helix 11	AB2	A	254	257	Right-handed 310
Helix 12	AB3	A	279	283	Right-handed alpha
Helix 13	AB4	A	284	286	Right-handed 310
Helix 14	AB5	A	288	293	Right-handed 310
Helix 15	AB6	A	315	327	Right-handed alpha
Helix 16	AB7	A	342	351	Right-handed alpha
Helix 17	AB8	A	358	377	Right-handed alpha
Helix 18	AB9	A	382	395	Right-handed alpha
Helix 19	AC1	A	412	424	Right-handed alpha
Helix 20	AC2	A	458	462	Right-handed 310
Helix 21	AC3	A	489	496	Right-handed alpha
Helix 22	AC4	A	537	545	Right-handed alpha
Helix 23	AC5	A	571	579	Right-handed alpha
Helix 24	AC6	A	581	599	Right-handed alpha
Helix 25	AC7	A	602	606	Right-handed 310
Helix 26	AC8	A	631	651	Right-handed alpha
Helix 27	AC9	B	18	30	Right-handed alpha
Helix 28	AD1	B	30	36	Right-handed alpha
Helix 29	AD2	B	39	47	Right-handed alpha
Helix 30	AD3	B	52	64	Right-handed alpha
Helix 31	AD4	B	99	116	Right-handed alpha
Helix 32	AD5	B	134	148	Right-handed alpha
Helix 33	AD6	B	159	171	Right-handed alpha
Helix 34	AD7	B	181	191	Right-handed alpha
Helix 35	AD8	B	207	224	Right-handed alpha
Helix 36	AD9	B	233	242	Right-handed alpha
Helix 37	AE1	B	254	257	Right-handed 310
Helix 38	AE2	B	279	283	Right-handed alpha
Helix 39	AE3	B	284	286	Right-handed 310
Helix 40	AE4	B	288	293	Right-handed 310
Helix 41	AE5	B	315	327	Right-handed alpha
Helix 42	AE6	B	342	351	Right-handed alpha
Helix 43	AE7	B	358	377	Right-handed alpha
Helix 44	AE8	B	382	395	Right-handed alpha
Helix 45	AE9	B	412	424	Right-handed alpha
Helix 46	AF1	B	458	462	Right-handed 310
Helix 47	AF2	B	489	496	Right-handed alpha
Helix 48	AF3	B	537	545	Right-handed alpha
Helix 49	AF4	B	571	579	Right-handed alpha
Helix 50	AF5	B	581	599	Right-handed alpha
Helix 51	AF6	B	602	606	Right-handed 310
Helix 52	AF7	B	631	651	Right-handed alpha

There are 14 sheets in PDB entry 5MST. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	98	first strand
Strand 2	A	68	79	anti-parallel
Strand 3	A	331	334	parallel
Strand 4	A	306	309	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	150	154	first strand
Strand 2	A	126	130	parallel
Strand 3	A	174	178	parallel
Strand 4	A	197	201	parallel
Strand 5	A	229	232	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	259	265	first strand
Strand 2	A	273	278	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	357	first strand
Strand 2	A	403	407	parallel
Strand 3	A	427	433	parallel
Strand 4	A	437	441	anti-parallel
Strand 5	A	444	445	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	450	456	first strand
Strand 2	A	472	479	anti-parallel
Strand 3	A	503	513	anti-parallel
Strand 4	A	516	522	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	526	528	first strand
Strand 2	A	534	536	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	550	556	first strand
Strand 2	A	565	570	anti-parallel
Strand 3	A	609	612	parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	98	first strand
Strand 2	B	68	79	anti-parallel
Strand 3	B	331	334	parallel
Strand 4	B	306	309	parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	150	154	first strand
Strand 2	B	126	130	parallel
Strand 3	B	174	178	parallel
Strand 4	B	197	201	parallel
Strand 5	B	229	232	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	259	264	first strand
Strand 2	B	274	278	anti-parallel

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There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	354	357	first strand
Strand 2	B	403	407	parallel
Strand 3	B	427	433	parallel
Strand 4	B	437	441	anti-parallel
Strand 5	B	444	445	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	450	456	first strand
Strand 2	B	472	479	anti-parallel
Strand 3	B	503	513	anti-parallel
Strand 4	B	516	522	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	526	528	first strand
Strand 2	B	534	536	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	550	556	first strand
Strand 2	B	565	570	anti-parallel
Strand 3	B	609	612	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MST

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MST