Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSU


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MSU entry

There are 3 chains in PDB entry 5MSU (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ARG 732LEU 1174
A
 ARG 732LEU 1174
B
 ASN 713ALA 1141
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 76 helices in PDB entry 5MSU. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
734 740Right-handed alpha
Helix 2
AA2
C
752 754Right-handed 310
Helix 3
AA3
C
755 759Right-handed 310
Helix 4
AA4
C
761 768Right-handed alpha
Helix 5
AA5
C
769 771Right-handed 310
Helix 6
AA6
C
788 804Right-handed alpha
Helix 7
AA7
C
817 829Right-handed alpha
Helix 8
AA8
C
833 847Right-handed alpha
Helix 9
AA9
C
857 862Right-handed 310
Helix 10
AB1
C
863 874Right-handed alpha
Helix 11
AB2
C
889 898Right-handed alpha
Helix 12
AB3
C
898 909Right-handed alpha
Helix 13
AB4
C
923 928Right-handed 310
Helix 14
AB5
C
929 933Right-handed 310
Helix 15
AB6
C
938 943Right-handed alpha
Helix 16
AB7
C
953 975Right-handed alpha
Helix 17
AB8
C
1000 1013Right-handed alpha
Helix 18
AB9
C
1038 1049Right-handed alpha
Helix 19
AC1
C
1050 1053Right-handed 310
Helix 20
AC2
C
1070 1081Right-handed alpha
Helix 21
AC3
C
1090 1104Right-handed alpha
Helix 22
AC4
C
1106 1112Right-handed alpha
Helix 23
AC5
C
1113 1122Right-handed 310
Helix 24
AC6
C
1135 1146Right-handed alpha
Helix 25
AC7
C
1157 1171Right-handed alpha
Helix 26
AC8
A
734 739Right-handed alpha
Helix 27
AC9
A
752 754Right-handed 310
Helix 28
AD1
A
755 759Right-handed 310
Helix 29
AD2
A
761 768Right-handed alpha
Helix 30
AD3
A
769 771Right-handed 310
Helix 31
AD4
A
788 804Right-handed alpha
Helix 32
AD5
A
817 829Right-handed alpha
Helix 33
AD6
A
833 847Right-handed alpha
Helix 34
AD7
A
857 862Right-handed 310
Helix 35
AD8
A
863 874Right-handed alpha
Helix 36
AD9
A
889 898Right-handed alpha
Helix 37
AE1
A
898 909Right-handed alpha
Helix 38
AE2
A
923 928Right-handed 310
Helix 39
AE3
A
929 933Right-handed 310
Helix 40
AE4
A
938 943Right-handed alpha
Helix 41
AE5
A
953 975Right-handed alpha
Helix 42
AE6
A
1000 1013Right-handed alpha
Helix 43
AE7
A
1038 1049Right-handed alpha
Helix 44
AE8
A
1050 1053Right-handed 310
Helix 45
AE9
A
1070 1081Right-handed alpha
Helix 46
AF1
A
1090 1104Right-handed alpha
Helix 47
AF2
A
1106 1112Right-handed alpha
Helix 48
AF3
A
1113 1122Right-handed 310
Helix 49
AF4
A
1135 1145Right-handed alpha
Helix 50
AF5
A
1157 1171Right-handed alpha
Helix 51
AF6
B
715 726Right-handed alpha
Helix 52
AF7
B
734 740Right-handed alpha
Helix 53
AF8
B
752 754Right-handed 310
Helix 54
AF9
B
755 759Right-handed 310
Helix 55
AG1
B
761 768Right-handed alpha
Helix 56
AG2
B
769 771Right-handed 310
Helix 57
AG3
B
788 804Right-handed alpha
Helix 58
AG4
B
817 829Right-handed alpha
Helix 59
AG5
B
833 847Right-handed alpha
Helix 60
AG6
B
857 862Right-handed 310
Helix 61
AG7
B
863 874Right-handed alpha
Helix 62
AG8
B
889 898Right-handed alpha
Helix 63
AG9
B
898 909Right-handed alpha
Helix 64
AH1
B
923 928Right-handed 310
Helix 65
AH2
B
929 933Right-handed 310
Helix 66
AH3
B
938 943Right-handed alpha
Helix 67
AH4
B
953 975Right-handed alpha
Helix 68
AH5
B
1000 1013Right-handed alpha
Helix 69
AH6
B
1038 1049Right-handed alpha
Helix 70
AH7
B
1050 1053Right-handed 310
Helix 71
AH8
B
1070 1081Right-handed alpha
Helix 72
AH9
B
1090 1104Right-handed alpha
Helix 73
AI1
B
1106 1112Right-handed alpha
Helix 74
AI2
B
1114 1122Right-handed 310
Helix 75
AI3
B
1135 1146Right-handed alpha
Helix 76
AI4
B
1157 1171Right-handed alpha
Back to top of page

There are 12 sheets in PDB entry 5MSU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
748 750first strand
Strand 2
C
945 947anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
848 852first strand
Strand 2
C
808 813parallel
Strand 3
C
780 784parallel
Strand 4
C
876 879parallel
Strand 5
C
916 921parallel
Strand 6
C
978 983parallel
Strand 7
C
1056 1061parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
985 987first strand
Strand 2
C
1035 1037parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
1014 1016first strand
Strand 2
C
1086 1088parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
748 750first strand
Strand 2
A
945 947anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
848 852first strand
Strand 2
A
808 813parallel
Strand 3
A
780 784parallel
Strand 4
A
876 879parallel
Strand 5
A
916 921parallel
Strand 6
A
978 983parallel
Strand 7
A
1056 1061parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
985 987first strand
Strand 2
A
1035 1037parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1014 1016first strand
Strand 2
A
1086 1088parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
748 750first strand
Strand 2
B
945 947anti-parallel
Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
848 852first strand
Strand 2
B
808 813parallel
Strand 3
B
780 784parallel
Strand 4
B
876 879parallel
Strand 5
B
916 921parallel
Strand 6
B
978 983parallel
Strand 7
B
1056 1060parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
985 987first strand
Strand 2
B
1035 1037parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1014 1016first strand
Strand 2
B
1086 1088parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il