Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MSV entry

There are 3 chains in PDB entry 5MSV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PRO 669	LEU 1188
B	ARG 668	LEU 1187
C	ARG 668	SER 957

There are120 helices in PDB entry 5MSV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	669	683	Right-handed alpha
Helix 2	AA2	A	694	699	Right-handed 310
Helix 3	AA3	A	701	717	Right-handed alpha
Helix 4	AA4	A	721	727	Right-handed alpha
Helix 5	AA5	A	731	744	Right-handed alpha
Helix 6	AA6	A	751	757	Right-handed alpha
Helix 7	AA7	A	766	768	Right-handed 310
Helix 8	AA8	A	769	773	Right-handed 310
Helix 9	AA9	A	775	782	Right-handed alpha
Helix 10	AB1	A	783	785	Right-handed 310
Helix 11	AB2	A	802	817	Right-handed alpha
Helix 12	AB3	A	818	820	Right-handed 310
Helix 13	AB4	A	831	843	Right-handed alpha
Helix 14	AB5	A	847	861	Right-handed alpha
Helix 15	AB6	A	871	876	Right-handed 310
Helix 16	AB7	A	877	888	Right-handed alpha
Helix 17	AB8	A	903	912	Right-handed alpha
Helix 18	AB9	A	912	923	Right-handed alpha
Helix 19	AC1	A	937	940	Right-handed 310
Helix 20	AC2	A	943	947	Right-handed 310
Helix 21	AC3	A	952	957	Right-handed alpha
Helix 22	AC4	A	967	989	Right-handed alpha
Helix 23	AC5	A	1014	1027	Right-handed alpha
Helix 24	AC6	A	1052	1065	Right-handed alpha
Helix 25	AC7	A	1084	1095	Right-handed alpha
Helix 26	AC8	A	1104	1118	Right-handed alpha
Helix 27	AC9	A	1120	1127	Right-handed alpha
Helix 28	AD1	A	1128	1136	Right-handed 310
Helix 29	AD2	A	1149	1160	Right-handed alpha
Helix 30	AD3	A	1171	1185	Right-handed alpha
Helix 31	AD4	B	669	683	Right-handed alpha
Helix 32	AD5	B	694	699	Right-handed 310
Helix 33	AD6	B	701	717	Right-handed alpha
Helix 34	AD7	B	721	727	Right-handed alpha
Helix 35	AD8	B	731	744	Right-handed alpha
Helix 36	AD9	B	751	757	Right-handed alpha
Helix 37	AE1	B	766	768	Right-handed 310
Helix 38	AE2	B	769	773	Right-handed 310
Helix 39	AE3	B	775	782	Right-handed alpha
Helix 40	AE4	B	783	785	Right-handed 310
Helix 41	AE5	B	802	817	Right-handed alpha
Helix 42	AE6	B	818	820	Right-handed 310
Helix 43	AE7	B	831	843	Right-handed alpha
Helix 44	AE8	B	847	861	Right-handed alpha
Helix 45	AE9	B	871	876	Right-handed 310
Helix 46	AF1	B	877	888	Right-handed alpha
Helix 47	AF2	B	903	912	Right-handed alpha
Helix 48	AF3	B	912	923	Right-handed alpha
Helix 49	AF4	B	937	940	Right-handed 310
Helix 50	AF5	B	943	947	Right-handed 310
Helix 51	AF6	B	952	957	Right-handed alpha
Helix 52	AF7	B	967	989	Right-handed alpha
Helix 53	AF8	B	1014	1027	Right-handed alpha
Helix 54	AF9	B	1052	1065	Right-handed alpha
Helix 55	AG1	B	1084	1095	Right-handed alpha
Helix 56	AG2	B	1104	1118	Right-handed alpha
Helix 57	AG3	B	1120	1127	Right-handed alpha
Helix 58	AG4	B	1128	1136	Right-handed 310
Helix 59	AG5	B	1149	1160	Right-handed alpha
Helix 60	AG6	B	1171	1185	Right-handed alpha
Helix 61	AG7	C	669	683	Right-handed alpha
Helix 62	AG8	C	694	699	Right-handed 310
Helix 63	AG9	C	701	717	Right-handed alpha
Helix 64	AH1	C	721	727	Right-handed alpha
Helix 65	AH2	C	731	744	Right-handed alpha
Helix 66	AH3	C	751	757	Right-handed alpha
Helix 67	AH4	C	766	768	Right-handed 310
Helix 68	AH5	C	769	773	Right-handed 310
Helix 69	AH6	C	775	782	Right-handed alpha
Helix 70	AH7	C	783	785	Right-handed 310
Helix 71	AH8	C	802	817	Right-handed alpha
Helix 72	AH9	C	818	820	Right-handed 310
Helix 73	AI1	C	831	843	Right-handed alpha
Helix 74	AI2	C	847	861	Right-handed alpha
Helix 75	AI3	C	871	876	Right-handed 310
Helix 76	AI4	C	877	888	Right-handed alpha
Helix 77	AI5	C	903	912	Right-handed alpha
Helix 78	AI6	C	912	923	Right-handed alpha
Helix 79	AI7	C	937	940	Right-handed 310
Helix 80	AI8	C	943	947	Right-handed 310
Helix 81	AI9	C	952	957	Right-handed alpha
Helix 82	AJ1	C	967	989	Right-handed alpha
Helix 83	AJ2	C	1014	1027	Right-handed alpha
Helix 84	AJ3	C	1052	1065	Right-handed alpha
Helix 85	AJ4	C	1084	1095	Right-handed alpha
Helix 86	AJ5	C	1104	1118	Right-handed alpha
Helix 87	AJ6	C	1120	1127	Right-handed alpha
Helix 88	AJ7	C	1128	1136	Right-handed 310
Helix 89	AJ8	C	1149	1160	Right-handed alpha
Helix 90	AJ9	C	1171	1185	Right-handed alpha
Helix 91	AK1	D	669	683	Right-handed alpha
Helix 92	AK2	D	694	699	Right-handed 310
Helix 93	AK3	D	701	717	Right-handed alpha
Helix 94	AK4	D	721	727	Right-handed alpha
Helix 95	AK5	D	731	744	Right-handed alpha
Helix 96	AK6	D	751	757	Right-handed alpha
Helix 97	AK7	D	766	768	Right-handed 310
Helix 98	AK8	D	769	773	Right-handed 310
Helix 99	AK9	D	775	782	Right-handed alpha
Helix 100	AL1	D	783	785	Right-handed 310
Helix 101	AL2	D	802	817	Right-handed alpha
Helix 102	AL3	D	818	820	Right-handed 310
Helix 103	AL4	D	831	843	Right-handed alpha
Helix 104	AL5	D	847	861	Right-handed alpha
Helix 105	AL6	D	871	876	Right-handed 310
Helix 106	AL7	D	877	888	Right-handed alpha
Helix 107	AL8	D	903	912	Right-handed alpha
Helix 108	AL9	D	912	923	Right-handed alpha
Helix 109	AM1	D	937	940	Right-handed 310
Helix 110	AM2	D	943	947	Right-handed 310
Helix 111	AM3	D	952	957	Right-handed alpha
Helix 112	AM4	D	967	989	Right-handed alpha
Helix 113	AM5	D	1014	1027	Right-handed alpha
Helix 114	AM6	D	1052	1065	Right-handed alpha
Helix 115	AM7	D	1084	1095	Right-handed alpha
Helix 116	AM8	D	1104	1118	Right-handed alpha
Helix 117	AM9	D	1120	1127	Right-handed alpha
Helix 118	AN1	D	1128	1136	Right-handed 310
Helix 119	AN2	D	1149	1160	Right-handed alpha
Helix 120	AN3	D	1171	1185	Right-handed alpha

There are 16 sheets in PDB entry 5MSV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	762	764	first strand
Strand 2	A	959	961	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	862	866	first strand
Strand 2	A	822	827	parallel
Strand 3	A	794	798	parallel
Strand 4	A	890	893	parallel
Strand 5	A	930	935	parallel
Strand 6	A	992	997	parallel
Strand 7	A	1070	1075	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	999	1001	first strand
Strand 2	A	1049	1051	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1028	1030	first strand
Strand 2	A	1100	1102	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	762	764	first strand
Strand 2	B	959	961	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	862	866	first strand
Strand 2	B	822	827	parallel
Strand 3	B	794	798	parallel
Strand 4	B	890	893	parallel
Strand 5	B	930	935	parallel
Strand 6	B	992	997	parallel
Strand 7	B	1070	1075	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	999	1001	first strand
Strand 2	B	1049	1051	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1028	1030	first strand
Strand 2	B	1100	1102	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	762	764	first strand
Strand 2	C	959	961	anti-parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	862	866	first strand
Strand 2	C	822	827	parallel
Strand 3	C	794	798	parallel
Strand 4	C	890	893	parallel
Strand 5	C	930	935	parallel
Strand 6	C	992	997	parallel
Strand 7	C	1070	1075	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	999	1001	first strand
Strand 2	C	1049	1051	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1028	1030	first strand
Strand 2	C	1100	1102	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	762	764	first strand
Strand 2	D	959	961	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	862	866	first strand
Strand 2	D	822	827	parallel
Strand 3	D	794	798	parallel
Strand 4	D	890	893	parallel
Strand 5	D	930	935	parallel
Strand 6	D	992	997	parallel
Strand 7	D	1070	1075	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	999	1001	first strand
Strand 2	D	1049	1051	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1028	1030	first strand
Strand 2	D	1100	1102	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MSV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSV