Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSW


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MSW entry

There is 1 chain in PDB entry 5MSW (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 17GLU 742
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 30 helices in PDB entry 5MSW. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
18 30Right-handed alpha
Helix 2
AA2
A
30 36Right-handed alpha
Helix 3
AA3
A
39 48Right-handed alpha
Helix 4
AA4
A
52 64Right-handed alpha
Helix 5
AA5
A
99 116Right-handed alpha
Helix 6
AA6
A
134 148Right-handed alpha
Helix 7
AA7
A
159 171Right-handed alpha
Helix 8
AA8
A
181 191Right-handed alpha
Helix 9
AA9
A
207 224Right-handed alpha
Helix 10
AB1
A
233 242Right-handed alpha
Helix 11
AB2
A
254 257Right-handed 310
Helix 12
AB3
A
279 283Right-handed alpha
Helix 13
AB4
A
288 293Right-handed 310
Helix 14
AB5
A
315 328Right-handed alpha
Helix 15
AB6
A
342 351Right-handed alpha
Helix 16
AB7
A
358 377Right-handed alpha
Helix 17
AB8
A
382 395Right-handed alpha
Helix 18
AB9
A
412 424Right-handed alpha
Helix 19
AC1
A
458 462Right-handed 310
Helix 20
AC2
A
489 496Right-handed alpha
Helix 21
AC3
A
537 545Right-handed alpha
Helix 22
AC4
A
571 579Right-handed alpha
Helix 23
AC5
A
581 600Right-handed alpha
Helix 24
AC6
A
602 606Right-handed 310
Helix 25
AC7
A
631 665Right-handed alpha
Helix 26
AC8
A
669 683Right-handed alpha
Helix 27
AC9
A
685 689Right-handed 310
Helix 28
AD1
A
701 717Right-handed alpha
Helix 29
AD2
A
721 727Right-handed alpha
Helix 30
AD3
A
731 741Right-handed alpha
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There are 7 sheets in PDB entry 5MSW. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
86 98first strand
Strand 2
A
68 79anti-parallel
Strand 3
A
331 334parallel
Strand 4
A
306 309parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 154first strand
Strand 2
A
126 130parallel
Strand 3
A
174 178parallel
Strand 4
A
197 201parallel
Strand 5
A
229 232parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
259 264first strand
Strand 2
A
274 278anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
354 357first strand
Strand 2
A
403 407parallel
Strand 3
A
427 433parallel
Strand 4
A
437 441anti-parallel
Strand 5
A
444 445anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
450 456first strand
Strand 2
A
472 479anti-parallel
Strand 3
A
503 513anti-parallel
Strand 4
A
516 522anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
526 528first strand
Strand 2
A
534 536anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 556first strand
Strand 2
A
565 570anti-parallel
Strand 3
A
609 612parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il