Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MSY entry

There are 3 chains in PDB entry 5MSY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 27	GLU 483
B	LYS 28	VAL 472
C	LYS 28	ASP 480

There are 47 helices in PDB entry 5MSY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	31	36	Right-handed 310
Helix 2	AA2	A	64	69	Right-handed alpha
Helix 3	AA3	A	70	84	Right-handed alpha
Helix 4	AA4	A	124	139	Right-handed alpha
Helix 5	AA5	A	149	155	Right-handed alpha
Helix 6	AA6	A	159	175	Right-handed alpha
Helix 7	AA7	A	193	208	Right-handed alpha
Helix 8	AA8	A	223	228	Right-handed alpha
Helix 9	AA9	A	264	274	Right-handed alpha
Helix 10	AB1	A	303	317	Right-handed alpha
Helix 11	AB2	A	326	331	Right-handed alpha
Helix 12	AB3	A	339	343	Right-handed 310
Helix 13	AB4	A	346	351	Right-handed alpha
Helix 14	AB5	A	358	368	Right-handed alpha
Helix 15	AB6	A	387	391	Right-handed 310
Helix 16	AB7	A	416	418	Right-handed 310
Helix 17	AB8	B	31	36	Right-handed 310
Helix 18	AB9	B	64	69	Right-handed alpha
Helix 19	AC1	B	70	83	Right-handed alpha
Helix 20	AC2	B	124	139	Right-handed alpha
Helix 21	AC3	B	149	155	Right-handed alpha
Helix 22	AC4	B	159	175	Right-handed alpha
Helix 23	AC5	B	193	208	Right-handed alpha
Helix 24	AC6	B	223	228	Right-handed alpha
Helix 25	AC7	B	264	273	Right-handed alpha
Helix 26	AC8	B	303	318	Right-handed alpha
Helix 27	AC9	B	326	331	Right-handed alpha
Helix 28	AD1	B	346	351	Right-handed alpha
Helix 29	AD2	B	353	368	Right-handed alpha
Helix 30	AD3	B	387	391	Right-handed 310
Helix 31	AD4	B	416	418	Right-handed 310
Helix 32	AD5	C	31	36	Right-handed 310
Helix 33	AD6	C	64	69	Right-handed alpha
Helix 34	AD7	C	70	84	Right-handed alpha
Helix 35	AD8	C	124	139	Right-handed alpha
Helix 36	AD9	C	149	155	Right-handed alpha
Helix 37	AE1	C	159	175	Right-handed alpha
Helix 38	AE2	C	193	208	Right-handed alpha
Helix 39	AE3	C	223	228	Right-handed alpha
Helix 40	AE4	C	264	274	Right-handed alpha
Helix 41	AE5	C	303	318	Right-handed alpha
Helix 42	AE6	C	326	331	Right-handed alpha
Helix 43	AE7	C	339	343	Right-handed 310
Helix 44	AE8	C	346	351	Right-handed alpha
Helix 45	AE9	C	358	368	Right-handed alpha
Helix 46	AF1	C	387	391	Right-handed 310
Helix 47	AF2	C	416	418	Right-handed 310

There are 15 sheets in PDB entry 5MSY. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	38	40	first strand
Strand 2	A	47	49	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	213	216	first strand
Strand 2	A	180	185	parallel
Strand 3	A	142	146	parallel
Strand 4	A	88	92	parallel
Strand 5	A	58	61	parallel
Strand 6	A	322	324	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	236	239	first strand
Strand 2	A	280	284	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	375	376	first strand
Strand 2	A	393	396	anti-parallel
Strand 3	A	400	405	anti-parallel
Strand 4	A	460	466	anti-parallel
Strand 5	A	423	429	anti-parallel
Strand 6	A	435	441	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	381	382	first strand
Strand 2	A	411	414	anti-parallel
Strand 3	A	445	448	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	38	40	first strand
Strand 2	B	47	49	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	216	first strand
Strand 2	B	180	185	parallel
Strand 3	B	142	146	parallel
Strand 4	B	88	92	parallel
Strand 5	B	58	61	parallel
Strand 6	B	322	323	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	236	239	anti-parallel
Strand 3	B	280	284	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	375	376	first strand
Strand 2	B	393	396	anti-parallel
Strand 3	B	400	405	anti-parallel
Strand 4	B	460	466	anti-parallel
Strand 5	B	423	429	anti-parallel
Strand 6	B	435	441	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	381	382	first strand
Strand 2	B	411	414	anti-parallel
Strand 3	B	445	448	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	38	40	first strand
Strand 2	C	47	49	anti-parallel
Strand 3	C	54	55	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	213	217	first strand
Strand 2	C	180	188	parallel
Strand 3	C	142	146	parallel
Strand 4	C	88	92	parallel
Strand 5	C	57	61	parallel
Strand 6	C	321	323	parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	236	239	anti-parallel
Strand 3	C	280	282	parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	376	first strand
Strand 2	C	393	396	anti-parallel
Strand 3	C	400	405	anti-parallel
Strand 4	C	460	466	anti-parallel
Strand 5	C	422	429	anti-parallel
Strand 6	C	435	442	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	381	382	first strand
Strand 2	C	411	414	anti-parallel
Strand 3	C	445	448	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MSY

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MSY