Analysis of interatomic Contacts of Structural Units in PDB entry:
5MTZ

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MTZ entry

There are 2 chains in PDB entry 5MTZ (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	PHE 0	ASP 820
B	PHE 0	PHE 809

There are 61 helices in PDB entry 5MTZ. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	39	45	Right-handed alpha
Helix 2	AA2	A	62	67	Right-handed alpha
Helix 3	AA3	A	67	79	Right-handed alpha
Helix 4	AA4	A	91	100	Right-handed alpha
Helix 5	AA5	A	147	162	Right-handed alpha
Helix 6	AA6	A	172	176	Right-handed 310
Helix 7	AA7	A	262	264	Right-handed 310
Helix 8	AA8	A	265	274	Right-handed alpha
Helix 9	AA9	A	295	303	Right-handed alpha
Helix 10	AB1	A	329	343	Right-handed alpha
Helix 11	AB2	A	358	364	Right-handed alpha
Helix 12	AB3	A	387	389	Right-handed 310
Helix 13	AB4	A	424	433	Right-handed alpha
Helix 14	AB5	A	434	437	Right-handed 310
Helix 15	AB6	A	447	451	Right-handed 310
Helix 16	AB7	A	459	465	Right-handed alpha
Helix 17	AB8	A	512	521	Right-handed alpha
Helix 18	AB9	A	522	532	Right-handed alpha
Helix 19	AC1	A	542	547	Right-handed alpha
Helix 20	AC2	A	548	561	Right-handed alpha
Helix 21	AC3	A	573	588	Right-handed alpha
Helix 22	AC4	A	589	593	Right-handed 310
Helix 23	AC5	A	600	604	Right-handed 310
Helix 24	AC6	A	618	622	Right-handed 310
Helix 25	AC7	A	640	645	Right-handed 310
Helix 26	AC8	A	647	659	Right-handed alpha
Helix 27	AC9	A	725	727	Right-handed 310
Helix 28	AD1	A	728	736	Right-handed alpha
Helix 29	AD2	A	739	751	Right-handed alpha
Helix 30	AD3	A	793	800	Right-handed 310
Helix 31	AD4	A	801	808	Right-handed alpha
Helix 32	AD5	A	809	817	Right-handed alpha
Helix 33	AD6	B	37	46	Right-handed alpha
Helix 34	AD7	B	62	67	Right-handed alpha
Helix 35	AD8	B	68	81	Right-handed alpha
Helix 36	AD9	B	91	100	Right-handed alpha
Helix 37	AE1	B	147	162	Right-handed alpha
Helix 38	AE2	B	265	274	Right-handed alpha
Helix 39	AE3	B	295	303	Right-handed alpha
Helix 40	AE4	B	304	306	Right-handed 310
Helix 41	AE5	B	329	343	Right-handed alpha
Helix 42	AE6	B	358	364	Right-handed alpha
Helix 43	AE7	B	387	389	Right-handed 310
Helix 44	AE8	B	424	433	Right-handed alpha
Helix 45	AE9	B	434	437	Right-handed 310
Helix 46	AF1	B	442	447	Right-handed alpha
Helix 47	AF2	B	448	451	Right-handed 310
Helix 48	AF3	B	461	465	Right-handed 310
Helix 49	AF4	B	512	521	Right-handed alpha
Helix 50	AF5	B	522	532	Right-handed alpha
Helix 51	AF6	B	542	546	Right-handed 310
Helix 52	AF7	B	548	561	Right-handed alpha
Helix 53	AF8	B	573	588	Right-handed alpha
Helix 54	AF9	B	591	593	Right-handed 310
Helix 55	AG1	B	601	604	Right-handed 310
Helix 56	AG2	B	641	645	Right-handed 310
Helix 57	AG3	B	647	658	Right-handed alpha
Helix 58	AG4	B	728	735	Right-handed alpha
Helix 59	AG5	B	739	750	Right-handed alpha
Helix 60	AG6	B	796	801	Right-handed alpha
Helix 61	AG7	B	802	807	Right-handed alpha

There are 12 sheets in PDB entry 5MTZ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	115	first strand
Strand 2	A	83	88	parallel
Strand 3	A	54	57	parallel
Strand 4	A	28	32	parallel
Strand 5	A	18	23	anti-parallel
Strand 6	A	2	8	anti-parallel
Strand 7	A	400	402	anti-parallel
Strand 8	A	414	416	anti-parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	121	123	first strand
Strand 2	A	127	135	anti-parallel
Strand 3	A	192	200	anti-parallel
Strand 4	A	254	260	anti-parallel
Strand 5	A	281	288	parallel
Strand 6	A	314	318	parallel
Strand 7	A	391	393	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	307	308	first strand
Strand 2	A	311	312	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	356	357	first strand
Strand 2	A	374	375	parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	595	597	first strand
Strand 2	A	568	571	parallel
Strand 3	A	533	537	parallel
Strand 4	A	500	509	parallel
Strand 5	A	486	494	anti-parallel
Strand 6	A	467	472	anti-parallel
Strand 7	A	788	791	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	660	667	first strand
Strand 2	A	675	682	anti-parallel
Strand 3	A	691	696	anti-parallel
Strand 4	A	717	721	parallel
Strand 5	A	754	758	parallel
Strand 6	A	780	783	parallel

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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	115	first strand
Strand 2	B	83	88	parallel
Strand 3	B	52	57	parallel
Strand 4	B	28	32	parallel
Strand 5	B	18	22	anti-parallel
Strand 6	B	2	8	anti-parallel
Strand 7	B	400	402	anti-parallel

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There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	121	123	first strand
Strand 2	B	127	135	anti-parallel
Strand 3	B	192	200	anti-parallel
Strand 4	B	254	260	anti-parallel
Strand 5	B	281	288	parallel
Strand 6	B	314	318	parallel
Strand 7	B	391	393	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	357	first strand
Strand 2	B	374	375	parallel

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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	595	599	first strand
Strand 2	B	568	572	parallel
Strand 3	B	533	537	parallel
Strand 4	B	500	509	parallel
Strand 5	B	486	494	anti-parallel
Strand 6	B	467	472	anti-parallel
Strand 7	B	788	791	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	612	613	first strand
Strand 2	B	639	640	anti-parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	660	667	first strand
Strand 2	B	675	682	anti-parallel
Strand 3	B	691	696	anti-parallel
Strand 4	B	717	721	parallel
Strand 5	B	754	758	parallel
Strand 6	B	780	783	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MTZ

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MTZ