Analysis of interatomic Contacts of Structural Units in PDB entry:
5MU3

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MU3 entry

There are 7 chains in PDB entry 5MU3 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA -1	SER 290
B	ASN 107	ILE 269
C	ASN 319	ILE 342
D	ALA -1	ILE 291
E	MET 106	HIS 226
E	TYR 228	ILE 269
F	SER 318	ILE 342

There are 20 helices in PDB entry 5MU3. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	108	119	Right-handed alpha
Helix 2	AA2	A	179	189	Right-handed alpha
Helix 3	AA3	A	194	222	Right-handed alpha
Helix 4	AA4	A	282	287	Right-handed 310
Helix 5	AA5	B	108	120	Right-handed alpha
Helix 6	AA6	B	161	176	Right-handed alpha
Helix 7	AA7	B	177	206	Right-handed alpha
Helix 8	AA8	B	245	257	Right-handed alpha
Helix 9	AA9	B	257	268	Right-handed alpha
Helix 10	AB1	C	320	330	Right-handed alpha
Helix 11	AB2	D	108	119	Right-handed alpha
Helix 12	AB3	D	179	189	Right-handed alpha
Helix 13	AB4	D	194	222	Right-handed alpha
Helix 14	AB5	D	282	291	Right-handed 310
Helix 15	AB6	E	107	120	Right-handed alpha
Helix 16	AB7	E	161	176	Right-handed alpha
Helix 17	AB8	E	177	205	Right-handed alpha
Helix 18	AB9	E	245	257	Right-handed alpha
Helix 19	AC1	E	257	268	Right-handed alpha
Helix 20	AC2	F	319	330	Right-handed alpha

There are 12 sheets in PDB entry 5MU3. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	129	first strand
Strand 2	A	132	139	anti-parallel
Strand 3	A	153	159	anti-parallel
Strand 4	A	167	172	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	142	143	first strand
Strand 2	A	148	149	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	230	237	anti-parallel
Strand 3	A	243	248	anti-parallel
Strand 4	A	251	258	anti-parallel
Strand 5	A	263	269	anti-parallel
Strand 6	A	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	226	227	first strand
Strand 2	A	230	237	anti-parallel
Strand 3	A	243	248	anti-parallel
Strand 4	A	251	258	anti-parallel
Strand 5	A	263	269	anti-parallel
Strand 6	A	279	280	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	123	127	first strand
Strand 2	B	130	135	anti-parallel
Strand 3	B	138	147	anti-parallel
Strand 4	B	150	158	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	209	210	first strand
Strand 2	B	215	218	anti-parallel
Strand 3	B	221	228	anti-parallel
Strand 4	B	237	242	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	122	129	first strand
Strand 2	D	132	139	anti-parallel
Strand 3	D	153	159	anti-parallel
Strand 4	D	167	172	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	142	143	first strand
Strand 2	D	148	149	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	230	237	anti-parallel
Strand 3	D	243	248	anti-parallel
Strand 4	D	251	258	anti-parallel
Strand 5	D	263	269	anti-parallel
Strand 6	D	272	273	anti-parallel

Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	226	227	first strand
Strand 2	D	230	237	anti-parallel
Strand 3	D	243	248	anti-parallel
Strand 4	D	251	258	anti-parallel
Strand 5	D	263	269	anti-parallel
Strand 6	D	279	280	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	123	127	first strand
Strand 2	E	130	135	anti-parallel
Strand 3	E	138	145	anti-parallel
Strand 4	E	153	158	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	209	210	first strand
Strand 2	E	215	218	anti-parallel
Strand 3	E	221	228	anti-parallel
Strand 4	E	237	242	anti-parallel
Strand 5	F	331	332	parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MU3

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MU3