Analysis of interatomic Contacts of Structural Units in PDB entry:
5MUA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MUA entry

There are 2 chains in PDB entry 5MUA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2PHE 286
B
 SER 2PHE 286
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 16 helices in PDB entry 5MUA. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
44 47Right-handed 310
Helix 2
AA2
A
75 77Right-handed 310
Helix 3
AA3
A
92 95Right-handed 310
Helix 4
AA4
A
153 162Right-handed alpha
Helix 5
AA5
A
183 195Right-handed alpha
Helix 6
AA6
A
196 199Right-handed 310
Helix 7
AA7
A
207 227Right-handed alpha
Helix 8
AA8
A
275 279Right-handed 310
Helix 9
AA9
B
44 47Right-handed 310
Helix 10
AB1
B
75 77Right-handed 310
Helix 11
AB2
B
92 95Right-handed 310
Helix 12
AB3
B
153 163Right-handed alpha
Helix 13
AB4
B
183 195Right-handed alpha
Helix 14
AB5
B
196 199Right-handed 310
Helix 15
AB6
B
207 227Right-handed alpha
Helix 16
AB7
B
275 279Right-handed 310
Back to top of page

There are 10 sheets in PDB entry 5MUA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
107 110first strand
Strand 2
A
97 100anti-parallel
Strand 3
A
59 64anti-parallel
Strand 4
A
49 53anti-parallel
Strand 5
A
7 13anti-parallel
Strand 6
A
144 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
19 23first strand
Strand 2
A
35 39anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
82 87anti-parallel
Strand 3
A
129 133anti-parallel
Strand 4
A
116 120anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 152first strand
Strand 2
A
178 180anti-parallel
Strand 3
A
233 234parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
166 174first strand
Strand 2
A
280 286parallel
Strand 3
A
237 243anti-parallel
Strand 4
A
246 255anti-parallel
Strand 5
A
258 265anti-parallel
Strand 6
A
272 273anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
107 110first strand
Strand 2
B
97 100anti-parallel
Strand 3
B
59 64anti-parallel
Strand 4
B
49 53anti-parallel
Strand 5
B
7 13anti-parallel
Strand 6
B
144 148anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
19 23first strand
Strand 2
B
35 39anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 73first strand
Strand 2
B
82 87anti-parallel
Strand 3
B
129 133anti-parallel
Strand 4
B
116 120anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
150 152first strand
Strand 2
B
178 180anti-parallel
Strand 3
B
233 234parallel
Back to list of sheets
Back to top of page

There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
166 174first strand
Strand 2
B
280 286parallel
Strand 3
B
237 243anti-parallel
Strand 4
B
246 255anti-parallel
Strand 5
B
258 265anti-parallel
Strand 6
B
272 273anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il