Analysis of interatomic Contacts of Structural Units in PDB entry:
5MUD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MUD entry

There are 2 chains in PDB entry 5MUD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 2THR 213
B
 SER 2THR 213
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 6 helices in PDB entry 5MUD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
80 84Right-handed 310
Helix 2
AA2
A
125 130Right-handed alpha
Helix 3
AA3
A
185 191Right-handed alpha
Helix 4
AA4
B
80 84Right-handed 310
Helix 5
AA5
B
125 131Right-handed alpha
Helix 6
AA6
B
185 192Right-handed alpha
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There are 12 sheets in PDB entry 5MUD. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
105 109parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
35 39anti-parallel
Strand 5
A
46 50anti-parallel
Strand 6
A
54 55anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
9 12first strand
Strand 2
A
105 109parallel
Strand 3
A
85 93anti-parallel
Strand 4
A
98 101anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
18 23first strand
Strand 2
A
71 76anti-parallel
Strand 3
A
63 68anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
134 143anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
163 165anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
118 122first strand
Strand 2
A
134 143anti-parallel
Strand 3
A
176 184anti-parallel
Strand 4
A
169 170anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
157 158first strand
Strand 2
A
149 154anti-parallel
Strand 3
A
195 201anti-parallel
Strand 4
A
204 210anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
105 109parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
35 39anti-parallel
Strand 5
B
46 50anti-parallel
Strand 6
B
54 55anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
9 12first strand
Strand 2
B
105 109parallel
Strand 3
B
86 93anti-parallel
Strand 4
B
98 101anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
17 23first strand
Strand 2
B
71 77anti-parallel
Strand 3
B
63 68anti-parallel
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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
134 143anti-parallel
Strand 3
B
176 184anti-parallel
Strand 4
B
163 165anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
118 122first strand
Strand 2
B
134 143anti-parallel
Strand 3
B
176 184anti-parallel
Strand 4
B
169 170anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
157 159first strand
Strand 2
B
149 154anti-parallel
Strand 3
B
195 201anti-parallel
Strand 4
B
204 210anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il