Analysis of interatomic Contacts of Structural Units in PDB entry:
5MUP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MUP entry

There are 3 chains in PDB entry 5MUP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	PRO 249
B	MET 1	ILE 249
C	ASN 2	PRO 397

There are 20 helices in PDB entry 5MUP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed alpha
Helix 2	AA2	A	33	38	Right-handed alpha
Helix 3	AA3	A	81	87	Right-handed alpha
Helix 4	AA4	A	91	97	Right-handed alpha
Helix 5	AA5	A	192	197	Right-handed 310
Helix 6	AA6	A	212	216	Right-handed 310
Helix 7	AA7	A	246	248	Right-handed 310
Helix 8	AA8	B	84	96	Right-handed alpha
Helix 9	AA9	B	99	103	Right-handed 310
Helix 10	AB1	B	106	111	Right-handed alpha
Helix 11	AB2	B	143	147	Right-handed 310
Helix 12	AB3	B	148	153	Right-handed alpha
Helix 13	AB4	B	154	159	Right-handed alpha
Helix 14	AB5	B	241	245	Right-handed 310
Helix 15	AB6	C	54	59	Right-handed alpha
Helix 16	AB7	C	105	112	Right-handed alpha
Helix 17	AB8	C	147	151	Right-handed 310
Helix 18	AB9	C	154	159	Right-handed alpha
Helix 19	AC1	C	368	372	Right-handed alpha
Helix 20	AC2	C	375	379	Right-handed 310

There are 15 sheets in PDB entry 5MUP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	220	225	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	61	65	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	120	124	anti-parallel
Strand 4	A	156	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	181	182	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	167	168	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	C	246	247	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	18	first strand
Strand 2	B	23	26	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	174	178	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	203	214	anti-parallel
Strand 3	B	132	141	anti-parallel
Strand 4	B	164	167	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	235	239	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	70	first strand
Strand 2	C	224	232	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	173	178	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	204	215	anti-parallel
Strand 3	C	134	143	anti-parallel
Strand 4	C	162	168	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	102	103	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	237	238	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	274	first strand
Strand 2	C	286	288	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	312	313	first strand
Strand 2	C	329	334	anti-parallel
Strand 3	C	340	343	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MUP

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MUP