Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV2


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MV2 entry

There is 1 chain in PDB entry 5MV2 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU -9GLY 400
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 11 helices in PDB entry 5MV2. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
-8 -4Right-handed 310
Helix 2
AA2
A
82 87Right-handed 310
Helix 3
AA3
A
100 104Right-handed 310
Helix 4
AA4
A
131 133Right-handed 310
Helix 5
AA5
A
154 161Right-handed alpha
Helix 6
AA6
A
181 183Right-handed 310
Helix 7
AA7
A
192 196Right-handed 310
Helix 8
AA8
A
197 199Right-handed 310
Helix 9
AA9
A
215 220Right-handed alpha
Helix 10
AB1
A
235 238Right-handed 310
Helix 11
AB2
A
258 266Right-handed alpha
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There are 9 sheets in PDB entry 5MV2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
31 35parallel
Strand 3
A
41 50anti-parallel
Strand 4
A
135 143anti-parallel
Strand 5
A
164 169anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 14first strand
Strand 2
A
31 35parallel
Strand 3
A
41 50anti-parallel
Strand 4
A
279 281anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
20 26first strand
Strand 2
A
284 290anti-parallel
Strand 3
A
185 190anti-parallel
Strand 4
A
175 179anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
Strand 3
A
54 72anti-parallel
Strand 4
A
225 227anti-parallel
Strand 5
A
230 234anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
90 99first strand
Strand 2
A
109 129anti-parallel
Strand 3
A
201 206anti-parallel
Strand 4
A
209 214anti-parallel
Strand 5
A
270 272anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
240 242first strand
Strand 2
A
252 254anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
308 316first strand
Strand 2
A
322 328anti-parallel
Strand 3
A
368 375anti-parallel
Strand 4
A
353 354anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
335 336first strand
Strand 2
A
360 361anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
350 351first strand
Strand 2
A
339 342anti-parallel
Strand 3
A
379 385anti-parallel
Strand 4
A
392 398anti-parallel
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