Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV5

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MV5 entry

There are 3 chains in PDB entry 5MV5 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	VAL 253
B	MET 1	ALA 251
C	ASN 2	LEU 398

There are 15 helices in PDB entry 5MV5. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed alpha
Helix 2	AA2	A	81	87	Right-handed alpha
Helix 3	AA3	A	91	96	Right-handed alpha
Helix 4	AA4	A	97	99	Right-handed 310
Helix 5	AA5	A	146	150	Right-handed 310
Helix 6	AA6	A	192	196	Right-handed 310
Helix 7	AA7	A	246	248	Right-handed 310
Helix 8	AA8	B	84	96	Right-handed alpha
Helix 9	AA9	B	99	103	Right-handed 310
Helix 10	AB1	B	106	111	Right-handed alpha
Helix 11	AB2	B	148	153	Right-handed alpha
Helix 12	AB3	C	54	59	Right-handed alpha
Helix 13	AB4	C	105	111	Right-handed alpha
Helix 14	AB5	C	154	159	Right-handed alpha
Helix 15	AB6	C	350	359	Right-handed alpha

There are 16 sheets in PDB entry 5MV5. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	9	11	first strand
Strand 2	C	173	178	parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	224	232	anti-parallel
Strand 5	C	63	70	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	220	225	anti-parallel

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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	61	65	anti-parallel
Strand 3	A	200	206	anti-parallel
Strand 4	A	120	124	anti-parallel
Strand 5	A	156	160	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	181	182	first strand
Strand 2	A	101	103	anti-parallel
Strand 3	A	232	233	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	170	172	anti-parallel
Strand 3	C	31	32	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	110	111	first strand
Strand 2	A	167	168	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	C	246	247	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	224	230	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	173	178	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	83	first strand
Strand 2	B	203	214	anti-parallel
Strand 3	B	132	141	anti-parallel
Strand 4	B	164	167	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	112	115	anti-parallel
Strand 3	B	236	239	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	102	103	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	237	238	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	168	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	204	208	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	162	168	first strand
Strand 2	C	134	143	anti-parallel
Strand 3	C	212	215	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	272	275	first strand
Strand 2	C	285	288	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	340	344	first strand
Strand 2	C	329	334	anti-parallel
Strand 3	C	308	314	anti-parallel
Strand 4	C	391	397	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MV5

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV5