Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV6

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MV6 entry

There are 3 chains in PDB entry 5MV6 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 2	VAL 253
B	MET 1	ARG 250
C	PRO 3	LEU 398

There are 18 helices in PDB entry 5MV6. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	27	Right-handed alpha
Helix 2	AA2	A	33	38	Right-handed alpha
Helix 3	AA3	A	81	87	Right-handed alpha
Helix 4	AA4	A	91	97	Right-handed alpha
Helix 5	AA5	A	191	197	Right-handed 310
Helix 6	AA6	A	246	248	Right-handed 310
Helix 7	AA7	B	85	96	Right-handed alpha
Helix 8	AA8	B	99	103	Right-handed 310
Helix 9	AA9	B	106	111	Right-handed alpha
Helix 10	AB1	B	148	153	Right-handed alpha
Helix 11	AB2	B	154	161	Right-handed alpha
Helix 12	AB3	B	241	245	Right-handed 310
Helix 13	AB4	C	54	60	Right-handed alpha
Helix 14	AB5	C	105	113	Right-handed alpha
Helix 15	AB6	C	154	159	Right-handed alpha
Helix 16	AB7	C	347	352	Right-handed alpha
Helix 17	AB8	C	366	373	Right-handed alpha
Helix 18	AB9	C	375	380	Right-handed 310

There are 14 sheets in PDB entry 5MV6. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	41	47	first strand
Strand 2	A	220	225	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	140	first strand
Strand 2	A	59	65	anti-parallel
Strand 3	A	200	206	anti-parallel
Strand 4	A	120	124	anti-parallel
Strand 5	A	156	160	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	101	102	first strand
Strand 2	A	181	182	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	106	107	first strand
Strand 2	A	171	172	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	C	246	247	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	63	69	first strand
Strand 2	B	224	231	anti-parallel
Strand 3	B	119	125	anti-parallel
Strand 4	B	174	178	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	79	84	first strand
Strand 2	B	204	214	anti-parallel
Strand 3	B	132	139	anti-parallel
Strand 4	B	164	167	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	188	first strand
Strand 2	B	112	116	anti-parallel
Strand 3	B	235	239	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	63	70	first strand
Strand 2	C	224	232	anti-parallel
Strand 3	C	121	127	anti-parallel
Strand 4	C	173	178	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	79	81	first strand
Strand 2	C	204	215	anti-parallel
Strand 3	C	134	143	anti-parallel
Strand 4	C	162	168	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	91	92	first strand
Strand 2	C	102	103	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	237	238	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	329	330	first strand
Strand 2	C	308	314	anti-parallel
Strand 3	C	391	397	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	333	334	first strand
Strand 2	C	340	341	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MV6

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV6