Analysis of interatomic Contacts of Structural Units in PDB entry:
5MV8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MV8 entry

There are 2 chains in PDB entry 5MV8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 0SER 2100
B
 TYR 433PHE 552
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 23 helices in PDB entry 5MV8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1611 1619Right-handed alpha
Helix 2
AA2
A
1654 1659Right-handed alpha
Helix 3
AA3
A
1662 1679Right-handed alpha
Helix 4
AA4
A
1688 1703Right-handed alpha
Helix 5
AA5
A
1706 1718Right-handed alpha
Helix 6
AA6
A
1723 1739Right-handed alpha
Helix 7
AA7
A
1747 1757Right-handed alpha
Helix 8
AA8
A
1763 1778Right-handed alpha
Helix 9
AA9
A
1785 1794Right-handed alpha
Helix 10
AB1
A
1820 1833Right-handed alpha
Helix 11
AB2
A
1858 1874Right-handed alpha
Helix 12
AB3
A
1903 1910Right-handed alpha
Helix 13
AB4
A
1910 1921Right-handed alpha
Helix 14
AB5
A
1927 1944Right-handed alpha
Helix 15
AB6
A
1956 1960Right-handed 310
Helix 16
AB7
A
1965 1969Right-handed 310
Helix 17
AB8
A
1970 1983Right-handed alpha
Helix 18
AB9
A
1984 1986Right-handed 310
Helix 19
AC1
A
1989 2002Right-handed alpha
Helix 20
AC2
A
2083 2099Right-handed alpha
Helix 21
AC3
B
438 442Right-handed 310
Helix 22
AC4
B
444 449Right-handed alpha
Helix 23
AC5
B
514 528Right-handed alpha
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There are 5 sheets in PDB entry 5MV8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1799 1805first strand
Strand 2
A
1809 1815anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1849 1852first strand
Strand 2
A
1840 1846anti-parallel
Strand 3
A
1886 1892anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2045 2049first strand
Strand 2
A
2034 2038anti-parallel
Strand 3
A
2025 2031anti-parallel
Strand 4
A
2010 2016anti-parallel
Strand 5
A
2077 2080anti-parallel
Strand 6
A
2063 2067anti-parallel
Strand 7
A
2056 2059anti-parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
453 459first strand
Strand 2
B
532 538anti-parallel
Strand 3
B
501 505anti-parallel
Strand 4
B
508 509anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
466 470first strand
Strand 2
B
479 484anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il