Analysis of interatomic Contacts of Structural Units in PDB entry:
5MVF


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MVF entry

There is 1 chain in PDB entry 5MVF (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 19GLU 403
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5MVF. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 36Right-handed alpha
Helix 2
AA2
A
36 43Right-handed alpha
Helix 3
AA3
A
44 49Right-handed alpha
Helix 4
AA4
A
54 58Right-handed 310
Helix 5
AA5
A
73 83Right-handed alpha
Helix 6
AA6
A
114 118Right-handed alpha
Helix 7
AA7
A
123 131Right-handed 310
Helix 8
AA8
A
132 137Right-handed alpha
Helix 9
AA9
A
146 152Right-handed alpha
Helix 10
AB1
A
173 185Right-handed alpha
Helix 11
AB2
A
200 210Right-handed alpha
Helix 12
AB3
A
213 215Right-handed 310
Helix 13
AB4
A
228 248Right-handed alpha
Helix 14
AB5
A
267 269Right-handed 310
Helix 15
AB6
A
270 321Right-handed alpha
Helix 16
AB7
A
326 337Right-handed alpha
Helix 17
AB8
A
337 350Right-handed alpha
Helix 18
AB9
A
358 367Right-handed alpha
Helix 19
AC1
A
368 369Right-handed 310
Helix 20
AC2
A
370 374Right-handed 310
Helix 21
AC3
A
378 391Right-handed alpha
Helix 22
AC4
A
391 402Right-handed alpha
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There is 1 sheet (AA1) in PDB entry 5MVF.

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 113first strand
Strand 2
A
139 143anti-parallel
Strand 3
A
100 104parallel
Strand 4
A
153 156anti-parallel
Strand 5
A
63 68parallel
Strand 6
A
187 193parallel
Strand 7
A
217 222parallel
Strand 8
A
255 257parallel
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