Analysis of interatomic Contacts of Structural Units in PDB entry:
5MVI

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MVI entry

There are 6 chains in PDB entry 5MVI (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	ASP 11	VAL 482
D	ASP 11	VAL 482
A	ASP 11	VAL 482
B	ASP 11	VAL 482
C	ASP 11	VAL 482
F	ASP 11	VAL 482

There are118 helices in PDB entry 5MVI. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	13	26	Right-handed alpha
Helix 2	AA2	E	30	52	Right-handed alpha
Helix 3	AA3	E	54	59	Right-handed alpha
Helix 4	AA4	E	84	98	Right-handed alpha
Helix 5	AA5	E	112	115	Right-handed 310
Helix 6	AA6	E	116	134	Right-handed alpha
Helix 7	AA7	E	140	160	Right-handed alpha
Helix 8	AA8	E	164	168	Right-handed 310
Helix 9	AA9	E	172	187	Right-handed alpha
Helix 10	AB1	E	190	204	Right-handed alpha
Helix 11	AB2	E	209	213	Right-handed 310
Helix 12	AB3	E	219	240	Right-handed alpha
Helix 13	AB4	E	256	262	Right-handed alpha
Helix 14	AB5	E	275	280	Right-handed alpha
Helix 15	AB6	E	431	449	Right-handed alpha
Helix 16	AB7	E	452	464	Right-handed alpha
Helix 17	AB8	E	465	470	Right-handed alpha
Helix 18	AB9	E	473	480	Right-handed alpha
Helix 19	AC1	D	13	26	Right-handed alpha
Helix 20	AC2	D	30	52	Right-handed alpha
Helix 21	AC3	D	54	59	Right-handed alpha
Helix 22	AC4	D	84	98	Right-handed alpha
Helix 23	AC5	D	112	115	Right-handed 310
Helix 24	AC6	D	116	134	Right-handed alpha
Helix 25	AC7	D	141	159	Right-handed alpha
Helix 26	AC8	D	164	168	Right-handed 310
Helix 27	AC9	D	172	187	Right-handed alpha
Helix 28	AD1	D	190	204	Right-handed alpha
Helix 29	AD2	D	209	213	Right-handed 310
Helix 30	AD3	D	219	241	Right-handed alpha
Helix 31	AD4	D	256	262	Right-handed alpha
Helix 32	AD5	D	275	280	Right-handed alpha
Helix 33	AD6	D	431	448	Right-handed alpha
Helix 34	AD7	D	452	464	Right-handed alpha
Helix 35	AD8	D	465	470	Right-handed alpha
Helix 36	AD9	D	473	480	Right-handed alpha
Helix 37	AE1	A	13	26	Right-handed alpha
Helix 38	AE2	A	30	52	Right-handed alpha
Helix 39	AE3	A	54	59	Right-handed alpha
Helix 40	AE4	A	84	98	Right-handed alpha
Helix 41	AE5	A	112	115	Right-handed 310
Helix 42	AE6	A	116	134	Right-handed alpha
Helix 43	AE7	A	141	159	Right-handed alpha
Helix 44	AE8	A	164	168	Right-handed 310
Helix 45	AE9	A	172	187	Right-handed alpha
Helix 46	AF1	A	190	204	Right-handed alpha
Helix 47	AF2	A	209	213	Right-handed 310
Helix 48	AF3	A	219	241	Right-handed alpha
Helix 49	AF4	A	256	262	Right-handed alpha
Helix 50	AF5	A	275	280	Right-handed alpha
Helix 51	AF6	A	290	293	Right-handed 310
Helix 52	AF7	A	294	303	Right-handed alpha
Helix 53	AF8	A	325	332	Right-handed alpha
Helix 54	AF9	A	340	345	Right-handed alpha
Helix 55	AG1	A	347	359	Right-handed alpha
Helix 56	AG2	A	367	372	Right-handed alpha
Helix 57	AG3	A	373	380	Right-handed alpha
Helix 58	AG4	A	388	397	Right-handed alpha
Helix 59	AG5	A	431	436	Right-handed alpha
Helix 60	AG6	A	436	449	Right-handed alpha
Helix 61	AG7	A	452	464	Right-handed alpha
Helix 62	AG8	A	465	470	Right-handed alpha
Helix 63	AG9	A	473	478	Right-handed alpha
Helix 64	AH1	A	479	482	Right-handed 310
Helix 65	AH2	B	13	26	Right-handed alpha
Helix 66	AH3	B	30	52	Right-handed alpha
Helix 67	AH4	B	54	59	Right-handed alpha
Helix 68	AH5	B	84	98	Right-handed alpha
Helix 69	AH6	B	112	115	Right-handed 310
Helix 70	AH7	B	116	134	Right-handed alpha
Helix 71	AH8	B	141	159	Right-handed alpha
Helix 72	AH9	B	164	168	Right-handed 310
Helix 73	AI1	B	172	187	Right-handed alpha
Helix 74	AI2	B	190	204	Right-handed alpha
Helix 75	AI3	B	209	213	Right-handed 310
Helix 76	AI4	B	219	241	Right-handed alpha
Helix 77	AI5	B	256	262	Right-handed alpha
Helix 78	AI6	B	275	280	Right-handed alpha
Helix 79	AI7	B	431	448	Right-handed alpha
Helix 80	AI8	B	452	464	Right-handed alpha
Helix 81	AI9	B	465	470	Right-handed alpha
Helix 82	AJ1	B	473	480	Right-handed alpha
Helix 83	AJ2	C	13	26	Right-handed alpha
Helix 84	AJ3	C	30	52	Right-handed alpha
Helix 85	AJ4	C	54	59	Right-handed alpha
Helix 86	AJ5	C	84	98	Right-handed alpha
Helix 87	AJ6	C	112	115	Right-handed 310
Helix 88	AJ7	C	116	134	Right-handed alpha
Helix 89	AJ8	C	140	159	Right-handed alpha
Helix 90	AJ9	C	164	168	Right-handed 310
Helix 91	AK1	C	172	187	Right-handed alpha
Helix 92	AK2	C	190	204	Right-handed alpha
Helix 93	AK3	C	209	213	Right-handed 310
Helix 94	AK4	C	219	240	Right-handed alpha
Helix 95	AK5	C	256	262	Right-handed alpha
Helix 96	AK6	C	275	280	Right-handed alpha
Helix 97	AK7	C	431	448	Right-handed alpha
Helix 98	AK8	C	452	464	Right-handed alpha
Helix 99	AK9	C	465	470	Right-handed alpha
Helix 100	AL1	C	473	481	Right-handed alpha
Helix 101	AL2	F	13	26	Right-handed alpha
Helix 102	AL3	F	30	52	Right-handed alpha
Helix 103	AL4	F	54	59	Right-handed alpha
Helix 104	AL5	F	84	98	Right-handed alpha
Helix 105	AL6	F	112	115	Right-handed 310
Helix 106	AL7	F	116	134	Right-handed alpha
Helix 107	AL8	F	140	159	Right-handed alpha
Helix 108	AL9	F	164	168	Right-handed 310
Helix 109	AM1	F	172	187	Right-handed alpha
Helix 110	AM2	F	190	204	Right-handed alpha
Helix 111	AM3	F	209	213	Right-handed 310
Helix 112	AM4	F	219	240	Right-handed alpha
Helix 113	AM5	F	256	262	Right-handed alpha
Helix 114	AM6	F	275	280	Right-handed alpha
Helix 115	AM7	F	431	448	Right-handed alpha
Helix 116	AM8	F	452	464	Right-handed alpha
Helix 117	AM9	F	465	470	Right-handed alpha
Helix 118	AN1	F	473	480	Right-handed alpha

There are 13 sheets in PDB entry 5MVI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	74	75	first strand
Strand 2	E	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	105	106	first strand
Strand 2	E	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	74	75	first strand
Strand 2	D	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	105	106	first strand
Strand 2	D	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	74	75	first strand
Strand 2	A	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	106	first strand
Strand 2	A	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	383	387	first strand
Strand 2	A	320	324	parallel
Strand 3	A	405	410	anti-parallel
Strand 4	A	416	422	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	74	75	first strand
Strand 2	B	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	105	106	first strand
Strand 2	B	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	74	75	first strand
Strand 2	C	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	105	106	first strand
Strand 2	C	110	111	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	74	75	first strand
Strand 2	F	82	83	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	105	106	first strand
Strand 2	F	110	111	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MVI

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MVI