Analysis of interatomic Contacts of Structural Units in PDB entry:
5MW8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MW8 entry

There is 1 chain in PDB entry 5MW8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 5VAL 464
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 18 helices in PDB entry 5MW8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 9Right-handed 310
Helix 2
AA2
A
44 62Right-handed alpha
Helix 3
AA3
A
62 68Right-handed alpha
Helix 4
AA4
A
81 93Right-handed alpha
Helix 5
AA5
A
97 103Right-handed 310
Helix 6
AA6
A
152 157Right-handed 310
Helix 7
AA7
A
159 171Right-handed alpha
Helix 8
AA8
A
181 186Right-handed alpha
Helix 9
AA9
A
189 203Right-handed alpha
Helix 10
AB1
A
230 242Right-handed alpha
Helix 11
AB2
A
253 270Right-handed alpha
Helix 12
AB3
A
317 327Right-handed alpha
Helix 13
AB4
A
332 350Right-handed alpha
Helix 14
AB5
A
352 357Right-handed alpha
Helix 15
AB6
A
364 371Right-handed alpha
Helix 16
AB7
A
381 400Right-handed alpha
Helix 17
AB8
A
442 444Right-handed 310
Helix 18
AB9
A
445 464Right-handed alpha
Back to top of page

There are 3 sheets in PDB entry 5MW8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
30 37anti-parallel
Strand 4
A
111 116anti-parallel
Strand 5
A
77 79anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
11 16first strand
Strand 2
A
20 25anti-parallel
Strand 3
A
30 37anti-parallel
Strand 4
A
104 105anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 212first strand
Strand 2
A
133 137anti-parallel
Strand 3
A
402 409anti-parallel
Strand 4
A
429 436anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il