Analysis of interatomic Contacts of Structural Units in PDB entry:
5MWC


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MWC entry

There are 4 chains in PDB entry 5MWC (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
D
 SER 12ILE 67
D
 PHE 71VAL 303
A
 LEU 13ILE 67
A
 PHE 71MET 306
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 5MWC. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
D
59 64Right-handed 310
Helix 2
AA2
D
71 74Right-handed 310
Helix 3
AA3
D
82 90Right-handed alpha
Helix 4
AA4
D
149 161Right-handed alpha
Helix 5
AA5
D
173 178Right-handed alpha
Helix 6
AA6
D
189 197Right-handed alpha
Helix 7
AA7
D
206 213Right-handed alpha
Helix 8
AA8
D
267 273Right-handed alpha
Helix 9
AA9
A
59 64Right-handed 310
Helix 10
AB1
A
71 74Right-handed 310
Helix 11
AB2
A
82 90Right-handed alpha
Helix 12
AB3
A
149 156Right-handed alpha
Helix 13
AB4
A
188 194Right-handed alpha
Helix 14
AB5
A
206 210Right-handed 310
Helix 15
AB6
A
267 273Right-handed alpha
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There are 5 sheets in PDB entry 5MWC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
143 148first strand
Strand 2
D
235 246anti-parallel
Strand 3
D
251 262anti-parallel
Strand 4
D
94 102anti-parallel
Strand 5
D
107 117anti-parallel
Strand 6
D
120 130anti-parallel
Strand 7
D
16 25parallel
Strand 8
D
28 38anti-parallel
Strand 9
D
45 51anti-parallel
Strand 10
D
290 300anti-parallel
Strand 11
D
276 286anti-parallel
Strand 12
D
224 232anti-parallel
Strand 13
D
235 246anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
76 77first strand
Strand 2
D
80 81anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
167 168first strand
Strand 2
D
204 205anti-parallel
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There are 13 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
143 148first strand
Strand 2
A
235 246anti-parallel
Strand 3
A
251 262anti-parallel
Strand 4
A
94 102anti-parallel
Strand 5
A
107 117anti-parallel
Strand 6
A
120 130anti-parallel
Strand 7
A
16 25parallel
Strand 8
A
28 38anti-parallel
Strand 9
A
45 51anti-parallel
Strand 10
A
290 300anti-parallel
Strand 11
A
276 286anti-parallel
Strand 12
A
224 232anti-parallel
Strand 13
A
235 246anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 77first strand
Strand 2
A
80 81anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il