Analysis of interatomic Contacts of Structural Units in PDB entry:
5MX1


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MX1 entry

There are 2 chains in PDB entry 5MX1 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 20LYS 347
B
 ALA 21ALA 317
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 5MX1. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
211 216Right-handed alpha
Helix 2
AA2
A
305 307Right-handed 310
Helix 3
AA3
A
308 316Right-handed alpha
Helix 4
AA4
A
329 333Right-handed 310
Helix 5
AA5
B
191 195Right-handed 310
Helix 6
AA6
B
211 216Right-handed alpha
Helix 7
AA7
B
239 243Right-handed 310
Helix 8
AA8
B
305 307Right-handed 310
Helix 9
AA9
B
308 318Right-handed alpha
Helix 10
AB1
B
329 333Right-handed 310
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There are 10 sheets in PDB entry 5MX1. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 13 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 30first strand
Strand 2
A
35 37anti-parallel
Strand 3
A
55 57parallel
Strand 4
A
79 81parallel
Strand 5
A
103 105parallel
Strand 6
A
127 129parallel
Strand 7
A
151 153parallel
Strand 8
A
175 177parallel
Strand 9
A
199 201parallel
Strand 10
A
223 225parallel
Strand 11
A
248 250parallel
Strand 12
A
272 274parallel
Strand 13
A
294 296parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
65 66first strand
Strand 2
A
89 90parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
161 162first strand
Strand 2
A
185 186parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
233 234first strand
Strand 2
A
258 259parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
302 303first strand
Strand 2
A
326 328parallel
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There are 13 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
28 30first strand
Strand 2
B
35 37anti-parallel
Strand 3
B
55 57parallel
Strand 4
B
79 81parallel
Strand 5
B
103 105parallel
Strand 6
B
127 129parallel
Strand 7
B
151 153parallel
Strand 8
B
175 177parallel
Strand 9
B
199 201parallel
Strand 10
B
223 225parallel
Strand 11
B
248 250parallel
Strand 12
B
272 274parallel
Strand 13
B
294 296parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
65 66first strand
Strand 2
B
89 90parallel
Strand 3
B
113 114parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
161 162first strand
Strand 2
B
185 186parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
233 234first strand
Strand 2
B
258 259parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
302 303first strand
Strand 2
B
326 328parallel
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