Analysis of interatomic Contacts of Structural Units in PDB entry:
5MX9


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MX9 entry

There is 1 chain in PDB entry 5MX9 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 217GLN 540
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 5MX9. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
249 257Right-handed 310
Helix 2
AA2
A
265 269Right-handed 310
Helix 3
AA3
A
284 293Right-handed alpha
Helix 4
AA4
A
296 301Right-handed alpha
Helix 5
AA5
A
305 309Right-handed 310
Helix 6
AA6
A
311 319Right-handed alpha
Helix 7
AA7
A
340 342Right-handed 310
Helix 8
AA8
A
365 371Right-handed 310
Helix 9
AA9
A
372 380Right-handed alpha
Helix 10
AB1
A
398 402Right-handed 310
Helix 11
AB2
A
404 408Right-handed 310
Helix 12
AB3
A
418 422Right-handed 310
Helix 13
AB4
A
423 451Right-handed alpha
Helix 14
AB5
A
472 474Right-handed 310
Helix 15
AB6
A
486 490Right-handed 310
Helix 16
AB7
A
516 525Right-handed alpha
Helix 17
AB8
A
529 533Right-handed 310
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There are 4 sheets in PDB entry 5MX9. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 228first strand
Strand 2
A
527 528anti-parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
273 275first strand
Strand 2
A
494 498anti-parallel
Strand 3
A
457 464anti-parallel
Strand 4
A
238 245parallel
Strand 5
A
385 390parallel
Strand 6
A
322 327parallel
Strand 7
A
344 346parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
512 513parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
469 470first strand
Strand 2
A
476 477anti-parallel
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