Analysis of interatomic Contacts of Structural Units in PDB entry:
5MXJ


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MXJ entry

There are 2 chains in PDB entry 5MXJ (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 6LEU 560
B
 GLU 6LEU 560
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 45 helices in PDB entry 5MXJ. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
17 33Right-handed alpha
Helix 2
AA2
A
79 94Right-handed alpha
Helix 3
AA3
A
147 158Right-handed alpha
Helix 4
AA4
A
159 163Right-handed 310
Helix 5
AA5
A
175 182Right-handed alpha
Helix 6
AA6
A
213 217Right-handed 310
Helix 7
AA7
A
249 255Right-handed 310
Helix 8
AA8
A
285 287Right-handed 310
Helix 9
AA9
A
288 302Right-handed alpha
Helix 10
AB1
A
314 322Right-handed alpha
Helix 11
AB2
A
323 328Right-handed alpha
Helix 12
AB3
A
335 347Right-handed alpha
Helix 13
AB4
A
360 376Right-handed alpha
Helix 14
AB5
A
393 402Right-handed alpha
Helix 15
AB6
A
408 417Right-handed 310
Helix 16
AB7
A
432 450Right-handed alpha
Helix 17
AB8
A
477 498Right-handed alpha
Helix 18
AB9
A
506 508Right-handed 310
Helix 19
AC1
A
509 515Right-handed alpha
Helix 20
AC2
A
518 536Right-handed alpha
Helix 21
AC3
A
544 548Right-handed 310
Helix 22
AC4
A
554 559Right-handed alpha
Helix 23
AC5
B
17 33Right-handed alpha
Helix 24
AC6
B
79 94Right-handed alpha
Helix 25
AC7
B
147 158Right-handed alpha
Helix 26
AC8
B
175 183Right-handed alpha
Helix 27
AC9
B
213 217Right-handed 310
Helix 28
AD1
B
222 226Right-handed 310
Helix 29
AD2
B
229 233Right-handed 310
Helix 30
AD3
B
250 255Right-handed 310
Helix 31
AD4
B
285 287Right-handed 310
Helix 32
AD5
B
288 302Right-handed alpha
Helix 33
AD6
B
314 322Right-handed alpha
Helix 34
AD7
B
323 327Right-handed 310
Helix 35
AD8
B
335 347Right-handed alpha
Helix 36
AD9
B
360 376Right-handed alpha
Helix 37
AE1
B
393 402Right-handed alpha
Helix 38
AE2
B
408 417Right-handed 310
Helix 39
AE3
B
432 450Right-handed alpha
Helix 40
AE4
B
477 497Right-handed alpha
Helix 41
AE5
B
506 508Right-handed 310
Helix 42
AE6
B
509 517Right-handed alpha
Helix 43
AE7
B
518 536Right-handed alpha
Helix 44
AE8
B
544 548Right-handed 310
Helix 45
AE9
B
554 559Right-handed alpha
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There are 10 sheets in PDB entry 5MXJ. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
37 39first strand
Strand 2
A
73 75anti-parallel
Strand 3
A
119 122parallel
Strand 4
A
97 100parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 134first strand
Strand 2
A
139 142anti-parallel
Strand 3
A
261 268anti-parallel
Strand 4
A
197 203anti-parallel
Strand 5
A
209 211anti-parallel
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There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
351 358anti-parallel
Strand 4
A
310 313anti-parallel
Strand 5
A
456 460anti-parallel
Strand 6
A
464 470anti-parallel
Strand 7
A
424 425anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
382 384first strand
Strand 2
A
276 283anti-parallel
Strand 3
A
351 358anti-parallel
Strand 4
A
310 313anti-parallel
Strand 5
A
456 460anti-parallel
Strand 6
A
464 470anti-parallel
Strand 7
A
428 430anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
420 421first strand
Strand 2
A
473 474anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
37 39first strand
Strand 2
B
73 75anti-parallel
Strand 3
B
119 122parallel
Strand 4
B
97 100parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
130 134first strand
Strand 2
B
139 142anti-parallel
Strand 3
B
261 268anti-parallel
Strand 4
B
197 203anti-parallel
Strand 5
B
209 211anti-parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
164 165first strand
Strand 2
B
270 271anti-parallel
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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
310 313anti-parallel
Strand 5
B
456 460anti-parallel
Strand 6
B
465 474anti-parallel
Strand 7
B
420 425anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
382 384first strand
Strand 2
B
276 283anti-parallel
Strand 3
B
351 358anti-parallel
Strand 4
B
310 313anti-parallel
Strand 5
B
456 460anti-parallel
Strand 6
B
465 474anti-parallel
Strand 7
B
428 429anti-parallel
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