Analysis of interatomic Contacts of Structural Units in PDB entry:
5MXM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MXM entry

There is 1 chain in PDB entry 5MXM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 2ILE 416
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 21 helices in PDB entry 5MXM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
7 11Right-handed 310
Helix 2
AA2
A
36 52Right-handed alpha
Helix 3
AA3
A
71 76Right-handed alpha
Helix 4
AA4
A
77 89Right-handed alpha
Helix 5
AA5
A
100 109Right-handed alpha
Helix 6
AA6
A
120 124Right-handed 310
Helix 7
AA7
A
142 156Right-handed alpha
Helix 8
AA8
A
164 168Right-handed 310
Helix 9
AA9
A
172 177Right-handed alpha
Helix 10
AB1
A
186 202Right-handed alpha
Helix 11
AB2
A
215 221Right-handed alpha
Helix 12
AB3
A
222 227Right-handed alpha
Helix 13
AB4
A
239 249Right-handed alpha
Helix 14
AB5
A
260 263Right-handed 310
Helix 15
AB6
A
264 275Right-handed alpha
Helix 16
AB7
A
316 330Right-handed alpha
Helix 17
AB8
A
344 347Right-handed 310
Helix 18
AB9
A
348 364Right-handed alpha
Helix 19
AC1
A
374 382Right-handed alpha
Helix 20
AC2
A
395 404Right-handed alpha
Helix 21
AC3
A
407 412Right-handed alpha
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There are 5 sheets in PDB entry 5MXM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
93 94first strand
Strand 2
A
114 117parallel
Strand 3
A
56 60parallel
Strand 4
A
17 21parallel
Strand 5
A
159 162parallel
Strand 6
A
183 185parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
28 29first strand
Strand 2
A
32 33anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
130 132first strand
Strand 2
A
138 140anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 280first strand
Strand 2
A
232 235parallel
Strand 3
A
207 211parallel
Strand 4
A
332 336parallel
Strand 5
A
367 371parallel
Strand 6
A
390 392parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
297 301first strand
Strand 2
A
284 288anti-parallel
Strand 3
A
311 315anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il