Analysis of interatomic Contacts of Structural Units in PDB entry:
5MXP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MXP entry

There are 2 chains in PDB entry 5MXP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 3LEU 296
B
 THR 3LEU 296
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 34 helices in PDB entry 5MXP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
43 48Right-handed 310
Helix 2
AA2
A
50 55Right-handed 310
Helix 3
AA3
A
79 95Right-handed alpha
Helix 4
AA4
A
105 118Right-handed alpha
Helix 5
AA5
A
142 155Right-handed alpha
Helix 6
AA6
A
155 164Right-handed alpha
Helix 7
AA7
A
167 172Right-handed alpha
Helix 8
AA8
A
172 177Right-handed alpha
Helix 9
AA9
A
183 192Right-handed alpha
Helix 10
AB1
A
193 195Right-handed 310
Helix 11
AB2
A
197 203Right-handed 310
Helix 12
AB3
A
204 210Right-handed alpha
Helix 13
AB4
A
216 231Right-handed alpha
Helix 14
AB5
A
249 260Right-handed alpha
Helix 15
AB6
A
274 278Right-handed 310
Helix 16
AB7
A
279 293Right-handed alpha
Helix 17
AB8
A
294 296Right-handed 310
Helix 18
AB9
B
43 48Right-handed 310
Helix 19
AC1
B
50 55Right-handed 310
Helix 20
AC2
B
79 95Right-handed alpha
Helix 21
AC3
B
105 118Right-handed alpha
Helix 22
AC4
B
137 141Right-handed 310
Helix 23
AC5
B
142 155Right-handed alpha
Helix 24
AC6
B
155 164Right-handed alpha
Helix 25
AC7
B
167 172Right-handed alpha
Helix 26
AC8
B
172 177Right-handed alpha
Helix 27
AC9
B
183 192Right-handed alpha
Helix 28
AD1
B
193 195Right-handed 310
Helix 29
AD2
B
197 203Right-handed 310
Helix 30
AD3
B
204 210Right-handed alpha
Helix 31
AD4
B
216 231Right-handed alpha
Helix 32
AD5
B
249 260Right-handed alpha
Helix 33
AD6
B
274 278Right-handed 310
Helix 34
AD7
B
279 294Right-handed alpha
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There are 2 sheets in PDB entry 5MXP. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
13 18first strand
Strand 2
A
21 28anti-parallel
Strand 3
A
59 63anti-parallel
Strand 4
A
33 37parallel
Strand 5
A
99 104parallel
Strand 6
A
122 128parallel
Strand 7
A
237 244parallel
Strand 8
A
263 271parallel
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There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
13 18first strand
Strand 2
B
21 28anti-parallel
Strand 3
B
59 63anti-parallel
Strand 4
B
33 37parallel
Strand 5
B
99 104parallel
Strand 6
B
122 128parallel
Strand 7
B
237 244parallel
Strand 8
B
263 271parallel
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