Analysis of interatomic Contacts of Structural Units in PDB entry:
5MY0

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MY0 entry

There are 6 chains in PDB entry 5MY0 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	HIS 580
A	LEU 582	ASN 852
B	SER 1	ASN 852
C	SER 1	ASN 852
D	SER 1	HIS 580
D	LEU 582	ASN 852

There are175 helices in PDB entry 5MY0. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	28	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	68	73	Right-handed alpha
Helix 5	AA5	A	76	93	Right-handed alpha
Helix 6	AA6	A	96	101	Right-handed 310
Helix 7	AA7	A	114	121	Right-handed alpha
Helix 8	AA8	A	129	136	Right-handed alpha
Helix 9	AA9	A	138	149	Right-handed alpha
Helix 10	AB1	A	159	161	Right-handed 310
Helix 11	AB2	A	162	177	Right-handed alpha
Helix 12	AB3	A	193	203	Right-handed alpha
Helix 13	AB4	A	237	239	Right-handed 310
Helix 14	AB5	A	265	277	Right-handed alpha
Helix 15	AB6	A	278	281	Right-handed 310
Helix 16	AB7	A	283	285	Right-handed 310
Helix 17	AB8	A	299	312	Right-handed alpha
Helix 18	AB9	A	313	316	Right-handed 310
Helix 19	AC1	A	325	330	Right-handed alpha
Helix 20	AC2	A	332	334	Right-handed 310
Helix 21	AC3	A	335	351	Right-handed alpha
Helix 22	AC4	A	366	371	Right-handed alpha
Helix 23	AC5	A	430	444	Right-handed alpha
Helix 24	AC6	A	447	457	Right-handed alpha
Helix 25	AC7	A	509	512	Right-handed 310
Helix 26	AC8	A	513	527	Right-handed alpha
Helix 27	AC9	A	533	540	Right-handed alpha
Helix 28	AD1	A	544	547	Right-handed 310
Helix 29	AD2	A	548	570	Right-handed alpha
Helix 30	AD3	A	582	591	Right-handed alpha
Helix 31	AD4	A	595	613	Right-handed alpha
Helix 32	AD5	A	626	634	Right-handed alpha
Helix 33	AD6	A	655	667	Right-handed alpha
Helix 34	AD7	A	684	688	Right-handed 310
Helix 35	AD8	A	690	700	Right-handed alpha
Helix 36	AD9	A	718	722	Right-handed 310
Helix 37	AE1	A	731	741	Right-handed alpha
Helix 38	AE2	A	745	750	Right-handed alpha
Helix 39	AE3	A	767	775	Right-handed alpha
Helix 40	AE4	A	791	805	Right-handed alpha
Helix 41	AE5	A	811	816	Right-handed 310
Helix 42	AE6	A	830	834	Right-handed 310
Helix 43	AE7	A	846	850	Right-handed 310
Helix 44	AE8	B	18	28	Right-handed alpha
Helix 45	AE9	B	43	47	Right-handed 310
Helix 46	AF1	B	61	66	Right-handed 310
Helix 47	AF2	B	68	73	Right-handed alpha
Helix 48	AF3	B	76	93	Right-handed alpha
Helix 49	AF4	B	96	101	Right-handed 310
Helix 50	AF5	B	114	121	Right-handed alpha
Helix 51	AF6	B	129	136	Right-handed alpha
Helix 52	AF7	B	138	149	Right-handed alpha
Helix 53	AF8	B	159	161	Right-handed 310
Helix 54	AF9	B	162	177	Right-handed alpha
Helix 55	AG1	B	193	203	Right-handed alpha
Helix 56	AG2	B	237	239	Right-handed 310
Helix 57	AG3	B	265	277	Right-handed alpha
Helix 58	AG4	B	278	281	Right-handed 310
Helix 59	AG5	B	283	285	Right-handed 310
Helix 60	AG6	B	299	312	Right-handed alpha
Helix 61	AG7	B	313	316	Right-handed 310
Helix 62	AG8	B	325	330	Right-handed alpha
Helix 63	AG9	B	332	334	Right-handed 310
Helix 64	AH1	B	335	351	Right-handed alpha
Helix 65	AH2	B	366	371	Right-handed alpha
Helix 66	AH3	B	430	444	Right-handed alpha
Helix 67	AH4	B	447	457	Right-handed alpha
Helix 68	AH5	B	509	512	Right-handed 310
Helix 69	AH6	B	513	527	Right-handed alpha
Helix 70	AH7	B	533	540	Right-handed alpha
Helix 71	AH8	B	544	547	Right-handed 310
Helix 72	AH9	B	548	570	Right-handed alpha
Helix 73	AI1	B	582	591	Right-handed alpha
Helix 74	AI2	B	595	612	Right-handed alpha
Helix 75	AI3	B	626	634	Right-handed alpha
Helix 76	AI4	B	655	667	Right-handed alpha
Helix 77	AI5	B	684	688	Right-handed 310
Helix 78	AI6	B	690	700	Right-handed alpha
Helix 79	AI7	B	718	722	Right-handed 310
Helix 80	AI8	B	724	729	Right-handed alpha
Helix 81	AI9	B	731	741	Right-handed alpha
Helix 82	AJ1	B	745	750	Right-handed alpha
Helix 83	AJ2	B	767	775	Right-handed alpha
Helix 84	AJ3	B	791	805	Right-handed alpha
Helix 85	AJ4	B	811	816	Right-handed 310
Helix 86	AJ5	B	830	834	Right-handed 310
Helix 87	AJ6	B	846	850	Right-handed 310
Helix 88	AJ7	C	18	28	Right-handed alpha
Helix 89	AJ8	C	43	47	Right-handed 310
Helix 90	AJ9	C	61	66	Right-handed 310
Helix 91	AK1	C	68	73	Right-handed alpha
Helix 92	AK2	C	76	93	Right-handed alpha
Helix 93	AK3	C	96	101	Right-handed 310
Helix 94	AK4	C	114	121	Right-handed alpha
Helix 95	AK5	C	129	136	Right-handed alpha
Helix 96	AK6	C	138	149	Right-handed alpha
Helix 97	AK7	C	159	161	Right-handed 310
Helix 98	AK8	C	162	177	Right-handed alpha
Helix 99	AK9	C	193	203	Right-handed alpha
Helix 100	AL1	C	237	239	Right-handed 310
Helix 101	AL2	C	265	277	Right-handed alpha
Helix 102	AL3	C	278	281	Right-handed 310
Helix 103	AL4	C	283	285	Right-handed 310
Helix 104	AL5	C	299	312	Right-handed alpha
Helix 105	AL6	C	313	316	Right-handed 310
Helix 106	AL7	C	325	330	Right-handed alpha
Helix 107	AL8	C	332	334	Right-handed 310
Helix 108	AL9	C	335	351	Right-handed alpha
Helix 109	AM1	C	366	371	Right-handed alpha
Helix 110	AM2	C	430	444	Right-handed alpha
Helix 111	AM3	C	447	457	Right-handed alpha
Helix 112	AM4	C	509	512	Right-handed 310
Helix 113	AM5	C	513	527	Right-handed alpha
Helix 114	AM6	C	533	540	Right-handed alpha
Helix 115	AM7	C	544	547	Right-handed 310
Helix 116	AM8	C	548	570	Right-handed alpha
Helix 117	AM9	C	582	591	Right-handed alpha
Helix 118	AN1	C	595	613	Right-handed alpha
Helix 119	AN2	C	626	634	Right-handed alpha
Helix 120	AN3	C	655	667	Right-handed alpha
Helix 121	AN4	C	684	688	Right-handed 310
Helix 122	AN5	C	690	700	Right-handed alpha
Helix 123	AN6	C	718	722	Right-handed 310
Helix 124	AN7	C	724	729	Right-handed alpha
Helix 125	AN8	C	731	741	Right-handed alpha
Helix 126	AN9	C	745	750	Right-handed alpha
Helix 127	AO1	C	767	775	Right-handed alpha
Helix 128	AO2	C	791	805	Right-handed alpha
Helix 129	AO3	C	811	816	Right-handed 310
Helix 130	AO4	C	830	834	Right-handed 310
Helix 131	AO5	C	846	850	Right-handed 310
Helix 132	AO6	D	18	28	Right-handed alpha
Helix 133	AO7	D	43	47	Right-handed 310
Helix 134	AO8	D	61	66	Right-handed 310
Helix 135	AO9	D	68	73	Right-handed alpha
Helix 136	AP1	D	76	93	Right-handed alpha
Helix 137	AP2	D	96	101	Right-handed 310
Helix 138	AP3	D	114	121	Right-handed alpha
Helix 139	AP4	D	129	136	Right-handed alpha
Helix 140	AP5	D	138	149	Right-handed alpha
Helix 141	AP6	D	159	161	Right-handed 310
Helix 142	AP7	D	162	177	Right-handed alpha
Helix 143	AP8	D	193	203	Right-handed alpha
Helix 144	AP9	D	237	239	Right-handed 310
Helix 145	AQ1	D	265	277	Right-handed alpha
Helix 146	AQ2	D	278	281	Right-handed 310
Helix 147	AQ3	D	283	285	Right-handed 310
Helix 148	AQ4	D	299	312	Right-handed alpha
Helix 149	AQ5	D	313	316	Right-handed 310
Helix 150	AQ6	D	325	330	Right-handed alpha
Helix 151	AQ7	D	332	334	Right-handed 310
Helix 152	AQ8	D	335	351	Right-handed alpha
Helix 153	AQ9	D	366	371	Right-handed alpha
Helix 154	AR1	D	430	444	Right-handed alpha
Helix 155	AR2	D	447	457	Right-handed alpha
Helix 156	AR3	D	509	512	Right-handed 310
Helix 157	AR4	D	513	527	Right-handed alpha
Helix 158	AR5	D	533	540	Right-handed alpha
Helix 159	AR6	D	544	547	Right-handed 310
Helix 160	AR7	D	548	570	Right-handed alpha
Helix 161	AR8	D	582	591	Right-handed alpha
Helix 162	AR9	D	595	612	Right-handed alpha
Helix 163	AS1	D	626	634	Right-handed alpha
Helix 164	AS2	D	655	667	Right-handed alpha
Helix 165	AS3	D	684	688	Right-handed 310
Helix 166	AS4	D	690	700	Right-handed alpha
Helix 167	AS5	D	718	722	Right-handed 310
Helix 168	AS6	D	724	729	Right-handed alpha
Helix 169	AS7	D	731	741	Right-handed alpha
Helix 170	AS8	D	745	750	Right-handed alpha
Helix 171	AS9	D	767	775	Right-handed alpha
Helix 172	AT1	D	791	805	Right-handed alpha
Helix 173	AT2	D	811	816	Right-handed 310
Helix 174	AT3	D	830	834	Right-handed 310
Helix 175	AT4	D	846	850	Right-handed 310

There are 22 sheets in PDB entry 5MY0. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	320	323	parallel
Strand 3	A	287	291	parallel
Strand 4	A	387	393	parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	244	253	anti-parallel
Strand 7	A	4	12	anti-parallel
Strand 8	A	227	235	anti-parallel
Strand 9	A	182	189	anti-parallel
Strand 10	A	106	111	parallel
Strand 11	A	154	158	parallel
Strand 12	B	154	158	anti-parallel
Strand 13	B	106	111	parallel
Strand 14	B	182	189	parallel
Strand 15	B	227	235	anti-parallel
Strand 16	B	4	12	anti-parallel
Strand 17	B	244	253	anti-parallel
Strand 18	B	398	406	anti-parallel
Strand 19	B	387	393	anti-parallel
Strand 20	B	287	291	parallel
Strand 21	B	320	323	parallel
Strand 22	B	374	376	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	51	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	381	382	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	428	first strand
Strand 2	A	467	473	anti-parallel
Strand 3	A	480	484	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	576	579	parallel
Strand 3	A	492	496	parallel
Strand 4	A	757	761	parallel
Strand 5	A	780	783	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	618	624	anti-parallel
Strand 3	A	648	654	anti-parallel
Strand 4	A	639	643	anti-parallel
Strand 5	A	743	744	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	51	52	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	381	382	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	428	first strand
Strand 2	B	467	473	anti-parallel
Strand 3	B	480	484	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	576	579	first strand
Strand 2	B	492	496	parallel
Strand 3	B	757	761	parallel
Strand 4	B	780	783	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	624	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	639	643	anti-parallel
Strand 4	B	743	744	parallel

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There are 22 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	C	320	323	parallel
Strand 3	C	287	291	parallel
Strand 4	C	387	393	parallel
Strand 5	C	398	406	anti-parallel
Strand 6	C	244	253	anti-parallel
Strand 7	C	4	12	anti-parallel
Strand 8	C	227	235	anti-parallel
Strand 9	C	182	189	anti-parallel
Strand 10	C	106	111	parallel
Strand 11	C	154	158	parallel
Strand 12	D	154	158	anti-parallel
Strand 13	D	106	111	parallel
Strand 14	D	182	189	parallel
Strand 15	D	227	235	anti-parallel
Strand 16	D	4	12	anti-parallel
Strand 17	D	244	253	anti-parallel
Strand 18	D	398	406	anti-parallel
Strand 19	D	387	393	anti-parallel
Strand 20	D	287	291	parallel
Strand 21	D	320	323	parallel
Strand 22	D	374	376	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	51	52	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	381	382	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	428	first strand
Strand 2	C	467	473	anti-parallel
Strand 3	C	480	484	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	576	579	first strand
Strand 2	C	492	496	parallel
Strand 3	C	757	761	parallel
Strand 4	C	780	783	parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	618	624	first strand
Strand 2	C	648	654	anti-parallel
Strand 3	C	639	643	anti-parallel
Strand 4	C	743	744	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	51	52	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	381	382	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	428	first strand
Strand 2	D	467	473	anti-parallel
Strand 3	D	480	484	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	713	first strand
Strand 2	D	576	579	parallel
Strand 3	D	492	496	parallel
Strand 4	D	757	761	parallel
Strand 5	D	780	783	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	672	675	first strand
Strand 2	D	618	624	anti-parallel
Strand 3	D	648	654	anti-parallel
Strand 4	D	639	643	anti-parallel
Strand 5	D	743	744	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MY0

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MY0