Analysis of interatomic Contacts of Structural Units in PDB entry:
5MY2

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MY2 entry

There are 4 chains in PDB entry 5MY2 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	ASN 852
B	SER 1	ASN 852
C	SER 1	ASN 852
D	SER 1	ASN 852

There are183 helices in PDB entry 5MY2. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	18	28	Right-handed alpha
Helix 2	AA2	A	43	47	Right-handed 310
Helix 3	AA3	A	61	66	Right-handed 310
Helix 4	AA4	A	68	74	Right-handed alpha
Helix 5	AA5	A	76	93	Right-handed alpha
Helix 6	AA6	A	96	101	Right-handed 310
Helix 7	AA7	A	114	121	Right-handed alpha
Helix 8	AA8	A	129	136	Right-handed alpha
Helix 9	AA9	A	138	149	Right-handed alpha
Helix 10	AB1	A	159	161	Right-handed 310
Helix 11	AB2	A	162	177	Right-handed alpha
Helix 12	AB3	A	193	203	Right-handed alpha
Helix 13	AB4	A	237	239	Right-handed 310
Helix 14	AB5	A	265	277	Right-handed alpha
Helix 15	AB6	A	278	281	Right-handed 310
Helix 16	AB7	A	283	285	Right-handed 310
Helix 17	AB8	A	299	312	Right-handed alpha
Helix 18	AB9	A	313	316	Right-handed 310
Helix 19	AC1	A	325	330	Right-handed alpha
Helix 20	AC2	A	332	334	Right-handed 310
Helix 21	AC3	A	335	350	Right-handed alpha
Helix 22	AC4	A	366	371	Right-handed alpha
Helix 23	AC5	A	415	419	Right-handed 310
Helix 24	AC6	A	430	444	Right-handed alpha
Helix 25	AC7	A	447	457	Right-handed alpha
Helix 26	AC8	A	508	512	Right-handed 310
Helix 27	AC9	A	513	528	Right-handed alpha
Helix 28	AD1	A	533	540	Right-handed alpha
Helix 29	AD2	A	544	547	Right-handed 310
Helix 30	AD3	A	548	570	Right-handed alpha
Helix 31	AD4	A	582	591	Right-handed alpha
Helix 32	AD5	A	595	612	Right-handed alpha
Helix 33	AD6	A	626	634	Right-handed alpha
Helix 34	AD7	A	655	659	Right-handed alpha
Helix 35	AD8	A	659	667	Right-handed alpha
Helix 36	AD9	A	684	688	Right-handed 310
Helix 37	AE1	A	690	702	Right-handed alpha
Helix 38	AE2	A	718	722	Right-handed 310
Helix 39	AE3	A	724	729	Right-handed alpha
Helix 40	AE4	A	731	741	Right-handed alpha
Helix 41	AE5	A	745	750	Right-handed alpha
Helix 42	AE6	A	767	775	Right-handed alpha
Helix 43	AE7	A	791	805	Right-handed alpha
Helix 44	AE8	A	811	816	Right-handed 310
Helix 45	AE9	A	830	834	Right-handed 310
Helix 46	AF1	A	846	850	Right-handed 310
Helix 47	AF2	B	18	28	Right-handed alpha
Helix 48	AF3	B	43	47	Right-handed 310
Helix 49	AF4	B	61	66	Right-handed 310
Helix 50	AF5	B	68	74	Right-handed alpha
Helix 51	AF6	B	76	93	Right-handed alpha
Helix 52	AF7	B	96	101	Right-handed 310
Helix 53	AF8	B	114	121	Right-handed alpha
Helix 54	AF9	B	129	136	Right-handed alpha
Helix 55	AG1	B	138	149	Right-handed alpha
Helix 56	AG2	B	159	161	Right-handed 310
Helix 57	AG3	B	162	177	Right-handed alpha
Helix 58	AG4	B	193	203	Right-handed alpha
Helix 59	AG5	B	237	239	Right-handed 310
Helix 60	AG6	B	265	277	Right-handed alpha
Helix 61	AG7	B	278	281	Right-handed 310
Helix 62	AG8	B	283	285	Right-handed 310
Helix 63	AG9	B	299	312	Right-handed alpha
Helix 64	AH1	B	313	316	Right-handed 310
Helix 65	AH2	B	325	330	Right-handed alpha
Helix 66	AH3	B	332	334	Right-handed 310
Helix 67	AH4	B	335	350	Right-handed alpha
Helix 68	AH5	B	366	371	Right-handed alpha
Helix 69	AH6	B	430	444	Right-handed alpha
Helix 70	AH7	B	447	457	Right-handed alpha
Helix 71	AH8	B	508	512	Right-handed 310
Helix 72	AH9	B	513	528	Right-handed alpha
Helix 73	AI1	B	533	540	Right-handed alpha
Helix 74	AI2	B	544	547	Right-handed 310
Helix 75	AI3	B	548	570	Right-handed alpha
Helix 76	AI4	B	582	591	Right-handed alpha
Helix 77	AI5	B	595	612	Right-handed alpha
Helix 78	AI6	B	626	634	Right-handed alpha
Helix 79	AI7	B	655	659	Right-handed alpha
Helix 80	AI8	B	659	667	Right-handed alpha
Helix 81	AI9	B	684	688	Right-handed 310
Helix 82	AJ1	B	690	702	Right-handed alpha
Helix 83	AJ2	B	718	722	Right-handed 310
Helix 84	AJ3	B	724	729	Right-handed alpha
Helix 85	AJ4	B	731	741	Right-handed alpha
Helix 86	AJ5	B	745	750	Right-handed alpha
Helix 87	AJ6	B	767	775	Right-handed alpha
Helix 88	AJ7	B	791	805	Right-handed alpha
Helix 89	AJ8	B	811	816	Right-handed 310
Helix 90	AJ9	B	830	834	Right-handed 310
Helix 91	AK1	B	846	850	Right-handed 310
Helix 92	AK2	C	18	28	Right-handed alpha
Helix 93	AK3	C	43	47	Right-handed 310
Helix 94	AK4	C	61	66	Right-handed 310
Helix 95	AK5	C	68	74	Right-handed alpha
Helix 96	AK6	C	76	93	Right-handed alpha
Helix 97	AK7	C	96	101	Right-handed 310
Helix 98	AK8	C	114	121	Right-handed alpha
Helix 99	AK9	C	129	136	Right-handed alpha
Helix 100	AL1	C	138	149	Right-handed alpha
Helix 101	AL2	C	159	161	Right-handed 310
Helix 102	AL3	C	162	177	Right-handed alpha
Helix 103	AL4	C	193	203	Right-handed alpha
Helix 104	AL5	C	237	239	Right-handed 310
Helix 105	AL6	C	265	277	Right-handed alpha
Helix 106	AL7	C	278	281	Right-handed 310
Helix 107	AL8	C	283	285	Right-handed 310
Helix 108	AL9	C	299	312	Right-handed alpha
Helix 109	AM1	C	313	316	Right-handed 310
Helix 110	AM2	C	325	330	Right-handed alpha
Helix 111	AM3	C	332	334	Right-handed 310
Helix 112	AM4	C	335	350	Right-handed alpha
Helix 113	AM5	C	366	371	Right-handed alpha
Helix 114	AM6	C	415	419	Right-handed 310
Helix 115	AM7	C	430	444	Right-handed alpha
Helix 116	AM8	C	447	457	Right-handed alpha
Helix 117	AM9	C	508	512	Right-handed 310
Helix 118	AN1	C	513	528	Right-handed alpha
Helix 119	AN2	C	533	540	Right-handed alpha
Helix 120	AN3	C	544	547	Right-handed 310
Helix 121	AN4	C	548	570	Right-handed alpha
Helix 122	AN5	C	582	591	Right-handed alpha
Helix 123	AN6	C	595	612	Right-handed alpha
Helix 124	AN7	C	626	634	Right-handed alpha
Helix 125	AN8	C	655	659	Right-handed alpha
Helix 126	AN9	C	659	667	Right-handed alpha
Helix 127	AO1	C	684	688	Right-handed 310
Helix 128	AO2	C	690	702	Right-handed alpha
Helix 129	AO3	C	718	722	Right-handed 310
Helix 130	AO4	C	724	729	Right-handed alpha
Helix 131	AO5	C	731	741	Right-handed alpha
Helix 132	AO6	C	745	750	Right-handed alpha
Helix 133	AO7	C	767	775	Right-handed alpha
Helix 134	AO8	C	791	805	Right-handed alpha
Helix 135	AO9	C	811	816	Right-handed 310
Helix 136	AP1	C	830	834	Right-handed 310
Helix 137	AP2	C	846	850	Right-handed 310
Helix 138	AP3	D	18	28	Right-handed alpha
Helix 139	AP4	D	43	47	Right-handed 310
Helix 140	AP5	D	61	66	Right-handed 310
Helix 141	AP6	D	68	74	Right-handed alpha
Helix 142	AP7	D	76	93	Right-handed alpha
Helix 143	AP8	D	96	101	Right-handed 310
Helix 144	AP9	D	114	121	Right-handed alpha
Helix 145	AQ1	D	129	136	Right-handed alpha
Helix 146	AQ2	D	138	149	Right-handed alpha
Helix 147	AQ3	D	159	161	Right-handed 310
Helix 148	AQ4	D	162	177	Right-handed alpha
Helix 149	AQ5	D	193	203	Right-handed alpha
Helix 150	AQ6	D	237	239	Right-handed 310
Helix 151	AQ7	D	265	277	Right-handed alpha
Helix 152	AQ8	D	278	281	Right-handed 310
Helix 153	AQ9	D	283	285	Right-handed 310
Helix 154	AR1	D	299	312	Right-handed alpha
Helix 155	AR2	D	313	316	Right-handed 310
Helix 156	AR3	D	325	330	Right-handed alpha
Helix 157	AR4	D	332	334	Right-handed 310
Helix 158	AR5	D	335	350	Right-handed alpha
Helix 159	AR6	D	366	371	Right-handed alpha
Helix 160	AR7	D	415	419	Right-handed 310
Helix 161	AR8	D	430	444	Right-handed alpha
Helix 162	AR9	D	447	457	Right-handed alpha
Helix 163	AS1	D	508	512	Right-handed 310
Helix 164	AS2	D	513	528	Right-handed alpha
Helix 165	AS3	D	533	540	Right-handed alpha
Helix 166	AS4	D	544	547	Right-handed 310
Helix 167	AS5	D	548	570	Right-handed alpha
Helix 168	AS6	D	582	591	Right-handed alpha
Helix 169	AS7	D	595	614	Right-handed alpha
Helix 170	AS8	D	626	634	Right-handed alpha
Helix 171	AS9	D	655	659	Right-handed alpha
Helix 172	AT1	D	659	667	Right-handed alpha
Helix 173	AT2	D	684	688	Right-handed 310
Helix 174	AT3	D	690	702	Right-handed alpha
Helix 175	AT4	D	718	722	Right-handed 310
Helix 176	AT5	D	724	729	Right-handed alpha
Helix 177	AT6	D	731	741	Right-handed alpha
Helix 178	AT7	D	745	750	Right-handed alpha
Helix 179	AT8	D	767	775	Right-handed alpha
Helix 180	AT9	D	791	805	Right-handed alpha
Helix 181	AU1	D	811	816	Right-handed 310
Helix 182	AU2	D	830	834	Right-handed 310
Helix 183	AU3	D	846	850	Right-handed 310

There are 22 sheets in PDB entry 5MY2. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 22 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	320	323	parallel
Strand 3	A	287	291	parallel
Strand 4	A	387	393	parallel
Strand 5	A	398	406	anti-parallel
Strand 6	A	244	253	anti-parallel
Strand 7	A	4	12	anti-parallel
Strand 8	A	227	235	anti-parallel
Strand 9	A	182	189	anti-parallel
Strand 10	A	106	111	parallel
Strand 11	A	154	158	parallel
Strand 12	B	154	158	anti-parallel
Strand 13	B	106	111	parallel
Strand 14	B	182	189	parallel
Strand 15	B	227	235	anti-parallel
Strand 16	B	4	12	anti-parallel
Strand 17	B	244	253	anti-parallel
Strand 18	B	398	406	anti-parallel
Strand 19	B	387	393	anti-parallel
Strand 20	B	287	291	parallel
Strand 21	B	320	323	parallel
Strand 22	B	374	376	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	33	34	first strand
Strand 2	A	51	52	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	352	353	first strand
Strand 2	A	381	382	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	422	428	first strand
Strand 2	A	467	473	anti-parallel
Strand 3	A	480	484	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	712	713	first strand
Strand 2	A	576	579	parallel
Strand 3	A	492	496	parallel
Strand 4	A	757	761	parallel
Strand 5	A	780	782	parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	675	first strand
Strand 2	A	618	624	anti-parallel
Strand 3	A	648	654	anti-parallel
Strand 4	A	639	643	anti-parallel
Strand 5	A	743	744	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	33	34	first strand
Strand 2	B	51	52	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	352	353	first strand
Strand 2	B	381	382	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	422	428	first strand
Strand 2	B	467	473	anti-parallel
Strand 3	B	480	484	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	712	713	first strand
Strand 2	B	576	579	parallel
Strand 3	B	492	496	parallel
Strand 4	B	757	761	parallel
Strand 5	B	780	782	parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	618	624	first strand
Strand 2	B	648	654	anti-parallel
Strand 3	B	639	643	anti-parallel
Strand 4	B	743	744	parallel

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There are 22 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	C	320	323	parallel
Strand 3	C	287	291	parallel
Strand 4	C	387	393	parallel
Strand 5	C	398	406	anti-parallel
Strand 6	C	244	253	anti-parallel
Strand 7	C	4	12	anti-parallel
Strand 8	C	227	235	anti-parallel
Strand 9	C	182	189	anti-parallel
Strand 10	C	106	111	parallel
Strand 11	C	154	158	parallel
Strand 12	D	154	158	anti-parallel
Strand 13	D	106	111	parallel
Strand 14	D	182	189	parallel
Strand 15	D	227	235	anti-parallel
Strand 16	D	4	12	anti-parallel
Strand 17	D	244	253	anti-parallel
Strand 18	D	398	406	anti-parallel
Strand 19	D	387	393	anti-parallel
Strand 20	D	287	291	parallel
Strand 21	D	320	323	parallel
Strand 22	D	374	376	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	33	34	first strand
Strand 2	C	51	52	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	352	353	first strand
Strand 2	C	381	382	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	422	428	first strand
Strand 2	C	467	473	anti-parallel
Strand 3	C	480	484	anti-parallel

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There are 5 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	712	713	first strand
Strand 2	C	576	579	parallel
Strand 3	C	492	496	parallel
Strand 4	C	757	761	parallel
Strand 5	C	780	782	parallel

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There are 5 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	672	674	first strand
Strand 2	C	618	624	anti-parallel
Strand 3	C	648	654	anti-parallel
Strand 4	C	639	643	anti-parallel
Strand 5	C	743	744	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	34	first strand
Strand 2	D	51	52	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	352	353	first strand
Strand 2	D	381	382	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	422	428	first strand
Strand 2	D	467	473	anti-parallel
Strand 3	D	480	484	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	712	713	first strand
Strand 2	D	576	579	parallel
Strand 3	D	492	496	parallel
Strand 4	D	757	761	parallel
Strand 5	D	780	782	parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	672	674	first strand
Strand 2	D	618	624	anti-parallel
Strand 3	D	648	654	anti-parallel
Strand 4	D	639	643	anti-parallel
Strand 5	D	743	744	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MY2

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MY2