Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYA


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MYA entry

There are 2 chains in PDB entry 5MYA (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASP 441SER 735
B
 SER 540THR 731
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are no helices in PDB entry 5MYA

There are 11 sheets in PDB entry 5MYA. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
446 447first strand
Strand 2
A
470 471anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
452 456first strand
Strand 2
A
461 464anti-parallel
Strand 3
A
501 504anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 496first strand
Strand 2
A
479 485anti-parallel
Strand 3
A
512 519anti-parallel
Strand 4
A
534 537anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
550 553first strand
Strand 2
A
559 562anti-parallel
Strand 3
A
599 602anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
588 594first strand
Strand 2
A
575 582anti-parallel
Strand 3
A
610 618anti-parallel
Strand 4
A
629 632anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
643 651first strand
Strand 2
A
654 660anti-parallel
Strand 3
A
696 700anti-parallel
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There are 7 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
727 730first strand
Strand 2
A
707 716anti-parallel
Strand 3
A
667 676anti-parallel
Strand 4
A
683 689anti-parallel
Strand 5
B
683 689anti-parallel
Strand 6
B
669 671anti-parallel
Strand 7
B
713 715anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
547 553first strand
Strand 2
B
559 564anti-parallel
Strand 3
B
599 601anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
588 594first strand
Strand 2
B
575 582anti-parallel
Strand 3
B
610 618anti-parallel
Strand 4
B
629 632anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
643 648first strand
Strand 2
B
655 660anti-parallel
Strand 3
B
696 699anti-parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
674 676first strand
Strand 2
B
707 710anti-parallel
Strand 3
B
727 730anti-parallel
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