Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYD


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MYD entry

There are 4 chains in PDB entry 5MYD (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1GLU 160
B
 THR 2GLY 164
C
 MET 1GLY 164
D
 THR 2ASP 163
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 5MYD. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
6 22Right-handed alpha
Helix 2
AA2
A
28 48Right-handed alpha
Helix 3
AA3
A
60 83Right-handed alpha
Helix 4
AA4
A
85 98Right-handed alpha
Helix 5
AA5
A
103 108Right-handed alpha
Helix 6
AA6
A
111 122Right-handed alpha
Helix 7
AA7
A
126 142Right-handed alpha
Helix 8
AA8
A
143 160Right-handed alpha
Helix 9
AA9
B
6 22Right-handed alpha
Helix 10
AB1
B
28 48Right-handed alpha
Helix 11
AB2
B
60 83Right-handed alpha
Helix 12
AB3
B
85 98Right-handed alpha
Helix 13
AB4
B
103 108Right-handed alpha
Helix 14
AB5
B
111 122Right-handed alpha
Helix 15
AB6
B
126 142Right-handed alpha
Helix 16
AB7
B
143 164Right-handed alpha
Helix 17
AB8
C
6 22Right-handed alpha
Helix 18
AB9
C
28 48Right-handed alpha
Helix 19
AC1
C
60 83Right-handed alpha
Helix 20
AC2
C
85 98Right-handed alpha
Helix 21
AC3
C
103 108Right-handed alpha
Helix 22
AC4
C
111 122Right-handed alpha
Helix 23
AC5
C
126 142Right-handed alpha
Helix 24
AC6
C
143 164Right-handed alpha
Helix 25
AC7
D
6 22Right-handed alpha
Helix 26
AC8
D
28 48Right-handed alpha
Helix 27
AC9
D
60 83Right-handed alpha
Helix 28
AD1
D
85 98Right-handed alpha
Helix 29
AD2
D
103 109Right-handed alpha
Helix 30
AD3
D
111 122Right-handed alpha
Helix 31
AD4
D
126 142Right-handed alpha
Helix 32
AD5
D
143 163Right-handed alpha
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There are no sheets in PDB entry 5MYD
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