Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5MYP entry

There are 2 chains in PDB entry 5MYP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 6LYS 490
B
 ALA 6LYS 490
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 52 helices in PDB entry 5MYP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
15 30Right-handed alpha
Helix 2
AA2
A
35 53Right-handed alpha
Helix 3
AA3
A
53 66Right-handed alpha
Helix 4
AA4
A
68 76Right-handed alpha
Helix 5
AA5
A
76 96Right-handed alpha
Helix 6
AA6
A
103 109Right-handed 310
Helix 7
AA7
A
131 144Right-handed alpha
Helix 8
AA8
A
156 171Right-handed alpha
Helix 9
AA9
A
182 192Right-handed alpha
Helix 10
AB1
A
202 215Right-handed alpha
Helix 11
AB2
A
236 238Right-handed 310
Helix 12
AB3
A
239 253Right-handed alpha
Helix 13
AB4
A
254 257Right-handed 310
Helix 14
AB5
A
271 288Right-handed alpha
Helix 15
AB6
A
288 297Right-handed alpha
Helix 16
AB7
A
303 310Right-handed alpha
Helix 17
AB8
A
318 329Right-handed alpha
Helix 18
AB9
A
330 332Right-handed 310
Helix 19
AC1
A
359 363Right-handed 310
Helix 20
AC2
A
378 388Right-handed alpha
Helix 21
AC3
A
401 412Right-handed alpha
Helix 22
AC4
A
423 428Right-handed 310
Helix 23
AC5
A
436 438Right-handed 310
Helix 24
AC6
A
446 453Right-handed alpha
Helix 25
AC7
A
467 472Right-handed 310
Helix 26
AC8
A
478 490Right-handed alpha
Helix 27
AC9
B
15 30Right-handed alpha
Helix 28
AD1
B
35 53Right-handed alpha
Helix 29
AD2
B
53 66Right-handed alpha
Helix 30
AD3
B
68 76Right-handed alpha
Helix 31
AD4
B
76 96Right-handed alpha
Helix 32
AD5
B
103 109Right-handed 310
Helix 33
AD6
B
131 144Right-handed alpha
Helix 34
AD7
B
156 171Right-handed alpha
Helix 35
AD8
B
182 192Right-handed alpha
Helix 36
AD9
B
202 215Right-handed alpha
Helix 37
AE1
B
236 238Right-handed 310
Helix 38
AE2
B
239 253Right-handed alpha
Helix 39
AE3
B
254 257Right-handed 310
Helix 40
AE4
B
271 288Right-handed alpha
Helix 41
AE5
B
288 297Right-handed alpha
Helix 42
AE6
B
303 310Right-handed alpha
Helix 43
AE7
B
318 329Right-handed alpha
Helix 44
AE8
B
330 332Right-handed 310
Helix 45
AE9
B
359 363Right-handed 310
Helix 46
AF1
B
378 388Right-handed alpha
Helix 47
AF2
B
401 412Right-handed alpha
Helix 48
AF3
B
423 428Right-handed 310
Helix 49
AF4
B
436 438Right-handed 310
Helix 50
AF5
B
446 453Right-handed alpha
Helix 51
AF6
B
467 472Right-handed 310
Helix 52
AF7
B
478 489Right-handed alpha
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There are 6 sheets in PDB entry 5MYP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
110 117first strand
Strand 2
A
454 461anti-parallel
Strand 3
B
417 419parallel
Strand 4
B
395 398parallel
Strand 5
B
229 232parallel
Strand 6
B
264 268parallel
Strand 7
B
370 376parallel
Strand 8
B
350 353parallel
Strand 9
B
333 336anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 178first strand
Strand 2
A
147 151parallel
Strand 3
A
120 124parallel
Strand 4
A
196 200parallel
Strand 5
A
220 223parallel
Strand 6
A
440 441anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 336first strand
Strand 2
A
350 353anti-parallel
Strand 3
A
370 376parallel
Strand 4
A
264 268parallel
Strand 5
A
229 232parallel
Strand 6
A
395 398parallel
Strand 7
A
417 419parallel
Strand 8
B
454 461parallel
Strand 9
B
110 117anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
340 341first strand
Strand 2
A
346 347anti-parallel
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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
176 178first strand
Strand 2
B
147 151parallel
Strand 3
B
120 124parallel
Strand 4
B
196 200parallel
Strand 5
B
220 223parallel
Strand 6
B
440 441anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
340 341first strand
Strand 2
B
346 347anti-parallel
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