Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYU

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MYU entry

There are 12 chains in PDB entry 5MYU (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
a	SER 2	LEU 128
A	ASN 61	ASP 490
b	SER 2	LEU 128
B	ASN 61	ASP 490
c	SER 2	LEU 128
C	ASN 61	ASP 490
d	SER 2	LEU 128
D	ASN 61	ASP 490
e	SER 2	LEU 128
E	ASN 61	ASP 490
f	SER 2	LEU 128
F	ASN 61	ASP 490

There are126 helices in PDB entry 5MYU. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	a	63	72	Right-handed alpha
Helix 2	AA2	a	99	103	Right-handed 310
Helix 3	AA3	a	104	112	Right-handed alpha
Helix 4	AA4	a	112	128	Right-handed alpha
Helix 5	AA5	A	62	85	Right-handed alpha
Helix 6	AA6	A	86	104	Right-handed alpha
Helix 7	AA7	A	107	111	Right-handed 310
Helix 8	AA8	A	120	131	Right-handed alpha
Helix 9	AA9	A	137	144	Right-handed alpha
Helix 10	AB1	A	168	186	Right-handed alpha
Helix 11	AB2	A	194	198	Right-handed 310
Helix 12	AB3	A	202	206	Right-handed 310
Helix 13	AB4	A	214	220	Right-handed 310
Helix 14	AB5	A	221	229	Right-handed alpha
Helix 15	AB6	A	268	272	Right-handed 310
Helix 16	AB7	A	276	293	Right-handed alpha
Helix 17	AB8	A	332	342	Right-handed alpha
Helix 18	AB9	A	373	387	Right-handed alpha
Helix 19	AC1	A	388	406	Right-handed alpha
Helix 20	AC2	A	415	428	Right-handed alpha
Helix 21	AC3	A	438	445	Right-handed alpha
Helix 22	AC4	b	63	72	Right-handed alpha
Helix 23	AC5	b	99	103	Right-handed 310
Helix 24	AC6	b	104	112	Right-handed alpha
Helix 25	AC7	b	112	128	Right-handed alpha
Helix 26	AC8	B	62	85	Right-handed alpha
Helix 27	AC9	B	86	104	Right-handed alpha
Helix 28	AD1	B	107	111	Right-handed 310
Helix 29	AD2	B	120	131	Right-handed alpha
Helix 30	AD3	B	137	144	Right-handed alpha
Helix 31	AD4	B	168	186	Right-handed alpha
Helix 32	AD5	B	194	198	Right-handed 310
Helix 33	AD6	B	202	206	Right-handed 310
Helix 34	AD7	B	214	220	Right-handed 310
Helix 35	AD8	B	221	229	Right-handed alpha
Helix 36	AD9	B	268	272	Right-handed 310
Helix 37	AE1	B	276	293	Right-handed alpha
Helix 38	AE2	B	332	342	Right-handed alpha
Helix 39	AE3	B	373	387	Right-handed alpha
Helix 40	AE4	B	388	406	Right-handed alpha
Helix 41	AE5	B	415	428	Right-handed alpha
Helix 42	AE6	B	438	445	Right-handed alpha
Helix 43	AE7	c	63	72	Right-handed alpha
Helix 44	AE8	c	99	103	Right-handed 310
Helix 45	AE9	c	104	112	Right-handed alpha
Helix 46	AF1	c	112	128	Right-handed alpha
Helix 47	AF2	C	62	85	Right-handed alpha
Helix 48	AF3	C	86	104	Right-handed alpha
Helix 49	AF4	C	107	111	Right-handed 310
Helix 50	AF5	C	120	131	Right-handed alpha
Helix 51	AF6	C	137	144	Right-handed alpha
Helix 52	AF7	C	168	186	Right-handed alpha
Helix 53	AF8	C	194	198	Right-handed 310
Helix 54	AF9	C	202	206	Right-handed 310
Helix 55	AG1	C	214	220	Right-handed 310
Helix 56	AG2	C	221	229	Right-handed alpha
Helix 57	AG3	C	268	272	Right-handed 310
Helix 58	AG4	C	276	293	Right-handed alpha
Helix 59	AG5	C	332	342	Right-handed alpha
Helix 60	AG6	C	373	387	Right-handed alpha
Helix 61	AG7	C	388	406	Right-handed alpha
Helix 62	AG8	C	415	428	Right-handed alpha
Helix 63	AG9	C	438	445	Right-handed alpha
Helix 64	AH1	d	63	72	Right-handed alpha
Helix 65	AH2	d	99	103	Right-handed 310
Helix 66	AH3	d	104	112	Right-handed alpha
Helix 67	AH4	d	112	128	Right-handed alpha
Helix 68	AH5	D	62	85	Right-handed alpha
Helix 69	AH6	D	86	104	Right-handed alpha
Helix 70	AH7	D	107	111	Right-handed 310
Helix 71	AH8	D	120	131	Right-handed alpha
Helix 72	AH9	D	137	144	Right-handed alpha
Helix 73	AI1	D	168	186	Right-handed alpha
Helix 74	AI2	D	194	198	Right-handed 310
Helix 75	AI3	D	202	206	Right-handed 310
Helix 76	AI4	D	214	220	Right-handed 310
Helix 77	AI5	D	221	229	Right-handed alpha
Helix 78	AI6	D	268	272	Right-handed 310
Helix 79	AI7	D	276	293	Right-handed alpha
Helix 80	AI8	D	332	342	Right-handed alpha
Helix 81	AI9	D	373	387	Right-handed alpha
Helix 82	AJ1	D	388	406	Right-handed alpha
Helix 83	AJ2	D	415	428	Right-handed alpha
Helix 84	AJ3	D	438	445	Right-handed alpha
Helix 85	AJ4	e	63	72	Right-handed alpha
Helix 86	AJ5	e	99	103	Right-handed 310
Helix 87	AJ6	e	104	112	Right-handed alpha
Helix 88	AJ7	e	112	128	Right-handed alpha
Helix 89	AJ8	E	62	85	Right-handed alpha
Helix 90	AJ9	E	86	104	Right-handed alpha
Helix 91	AK1	E	107	111	Right-handed 310
Helix 92	AK2	E	120	131	Right-handed alpha
Helix 93	AK3	E	137	144	Right-handed alpha
Helix 94	AK4	E	168	186	Right-handed alpha
Helix 95	AK5	E	194	198	Right-handed 310
Helix 96	AK6	E	202	206	Right-handed 310
Helix 97	AK7	E	214	220	Right-handed 310
Helix 98	AK8	E	221	229	Right-handed alpha
Helix 99	AK9	E	268	272	Right-handed 310
Helix 100	AL1	E	276	293	Right-handed alpha
Helix 101	AL2	E	332	342	Right-handed alpha
Helix 102	AL3	E	373	387	Right-handed alpha
Helix 103	AL4	E	388	406	Right-handed alpha
Helix 104	AL5	E	415	428	Right-handed alpha
Helix 105	AL6	E	438	445	Right-handed alpha
Helix 106	AL7	f	63	72	Right-handed alpha
Helix 107	AL8	f	99	103	Right-handed 310
Helix 108	AL9	f	104	112	Right-handed alpha
Helix 109	AM1	f	112	128	Right-handed alpha
Helix 110	AM2	F	62	85	Right-handed alpha
Helix 111	AM3	F	86	104	Right-handed alpha
Helix 112	AM4	F	107	111	Right-handed 310
Helix 113	AM5	F	120	131	Right-handed alpha
Helix 114	AM6	F	137	144	Right-handed alpha
Helix 115	AM7	F	168	186	Right-handed alpha
Helix 116	AM8	F	194	198	Right-handed 310
Helix 117	AM9	F	202	206	Right-handed 310
Helix 118	AN1	F	214	220	Right-handed 310
Helix 119	AN2	F	221	229	Right-handed alpha
Helix 120	AN3	F	268	272	Right-handed 310
Helix 121	AN4	F	276	293	Right-handed alpha
Helix 122	AN5	F	332	342	Right-handed alpha
Helix 123	AN6	F	373	387	Right-handed alpha
Helix 124	AN7	F	388	406	Right-handed alpha
Helix 125	AN8	F	415	428	Right-handed alpha
Helix 126	AN9	F	438	445	Right-handed alpha

There are 42 sheets in PDB entry 5MYU. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	13	17	first strand
Strand 2	F	479	483	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	57	59	first strand
Strand 2	A	114	118	anti-parallel
Strand 3	a	35	40	parallel
Strand 4	A	156	162	parallel
Strand 5	A	189	192	parallel
Strand 6	A	236	239	parallel
Strand 7	A	344	345	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	a	73	80	first strand
Strand 2	a	90	97	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	274	275	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	306	307	first strand
Strand 2	A	356	358	anti-parallel
Strand 3	A	347	349	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	313	316	first strand
Strand 2	A	321	324	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	447	456	first strand
Strand 2	A	464	472	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	479	483	first strand
Strand 2	b	13	17	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	57	59	first strand
Strand 2	B	114	118	anti-parallel
Strand 3	b	35	40	parallel
Strand 4	B	156	162	parallel
Strand 5	B	189	192	parallel
Strand 6	B	236	239	parallel
Strand 7	B	344	345	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	b	73	80	first strand
Strand 2	b	90	97	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	274	275	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	306	307	first strand
Strand 2	B	356	358	anti-parallel
Strand 3	B	347	349	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	313	316	first strand
Strand 2	B	321	324	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	447	456	first strand
Strand 2	B	464	472	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	479	483	first strand
Strand 2	c	13	17	parallel

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There are 7 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	57	59	first strand
Strand 2	C	114	118	anti-parallel
Strand 3	c	35	40	parallel
Strand 4	C	156	162	parallel
Strand 5	C	189	192	parallel
Strand 6	C	236	239	parallel
Strand 7	C	344	345	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	c	73	80	first strand
Strand 2	c	90	97	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	274	275	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	306	307	first strand
Strand 2	C	356	358	anti-parallel
Strand 3	C	347	349	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	313	316	first strand
Strand 2	C	321	324	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	447	456	first strand
Strand 2	C	464	472	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	479	483	first strand
Strand 2	d	13	17	parallel

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There are 7 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	57	59	first strand
Strand 2	D	114	118	anti-parallel
Strand 3	d	35	40	parallel
Strand 4	D	156	162	parallel
Strand 5	D	189	192	parallel
Strand 6	D	236	239	parallel
Strand 7	D	344	345	parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	d	73	80	first strand
Strand 2	d	90	97	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	244	first strand
Strand 2	D	274	275	anti-parallel

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There are 3 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	306	307	first strand
Strand 2	D	356	358	anti-parallel
Strand 3	D	347	349	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	313	316	first strand
Strand 2	D	321	324	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	447	456	first strand
Strand 2	D	464	472	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	479	483	first strand
Strand 2	e	13	17	parallel

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There are 7 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	57	59	first strand
Strand 2	E	114	118	anti-parallel
Strand 3	e	35	40	parallel
Strand 4	E	156	162	parallel
Strand 5	E	189	192	parallel
Strand 6	E	236	239	parallel
Strand 7	E	344	345	parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	e	73	80	first strand
Strand 2	e	90	97	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	243	244	first strand
Strand 2	E	274	275	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	306	307	first strand
Strand 2	E	356	358	anti-parallel
Strand 3	E	347	349	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	313	316	first strand
Strand 2	E	321	324	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	447	456	first strand
Strand 2	E	464	472	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	479	483	first strand
Strand 2	f	13	17	parallel

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There are 7 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	57	59	first strand
Strand 2	F	114	118	anti-parallel
Strand 3	f	35	40	parallel
Strand 4	F	156	162	parallel
Strand 5	F	189	192	parallel
Strand 6	F	236	239	parallel
Strand 7	F	344	345	parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	f	73	80	first strand
Strand 2	f	90	97	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	243	244	first strand
Strand 2	F	274	275	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	306	307	first strand
Strand 2	F	356	358	anti-parallel
Strand 3	F	347	349	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	313	316	first strand
Strand 2	F	321	324	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	447	456	first strand
Strand 2	F	464	472	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MYU

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYU