Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYV

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MYV entry

There are 4 chains in PDB entry 5MYV (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	TYR 79	SER 699
B	TYR 79	SER 699
C	TYR 79	SER 699
D	TYR 79	ASN 531

There are 77 helices in PDB entry 5MYV. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	126	146	Right-handed alpha
Helix 2	AA2	A	150	156	Right-handed 310
Helix 3	AA3	A	197	218	Right-handed alpha
Helix 4	AA4	A	227	229	Right-handed 310
Helix 5	AA5	A	236	251	Right-handed alpha
Helix 6	AA6	A	528	532	Right-handed 310
Helix 7	AA7	A	541	545	Right-handed 310
Helix 8	AA8	A	558	562	Right-handed 310
Helix 9	AA9	A	563	569	Right-handed alpha
Helix 10	AB1	A	574	591	Right-handed alpha
Helix 11	AB2	A	604	618	Right-handed alpha
Helix 12	AB3	A	621	626	Right-handed alpha
Helix 13	AB4	A	630	635	Right-handed alpha
Helix 14	AB5	A	651	659	Right-handed alpha
Helix 15	AB6	A	663	675	Right-handed alpha
Helix 16	AB7	A	676	679	Right-handed 310
Helix 17	AB8	A	681	685	Right-handed 310
Helix 18	AB9	A	687	693	Right-handed alpha
Helix 19	AC1	A	694	698	Right-handed 310
Helix 20	AC2	B	126	146	Right-handed alpha
Helix 21	AC3	B	150	156	Right-handed 310
Helix 22	AC4	B	183	190	Right-handed alpha
Helix 23	AC5	B	197	218	Right-handed alpha
Helix 24	AC6	B	227	229	Right-handed 310
Helix 25	AC7	B	236	246	Right-handed alpha
Helix 26	AC8	B	528	532	Right-handed 310
Helix 27	AC9	B	541	545	Right-handed 310
Helix 28	AD1	B	558	562	Right-handed 310
Helix 29	AD2	B	563	569	Right-handed alpha
Helix 30	AD3	B	574	591	Right-handed alpha
Helix 31	AD4	B	604	618	Right-handed alpha
Helix 32	AD5	B	621	626	Right-handed alpha
Helix 33	AD6	B	630	635	Right-handed alpha
Helix 34	AD7	B	651	659	Right-handed alpha
Helix 35	AD8	B	663	675	Right-handed alpha
Helix 36	AD9	B	676	679	Right-handed 310
Helix 37	AE1	B	681	685	Right-handed 310
Helix 38	AE2	B	687	693	Right-handed alpha
Helix 39	AE3	B	694	698	Right-handed 310
Helix 40	AE4	C	126	146	Right-handed alpha
Helix 41	AE5	C	150	156	Right-handed 310
Helix 42	AE6	C	183	190	Right-handed alpha
Helix 43	AE7	C	197	218	Right-handed alpha
Helix 44	AE8	C	227	229	Right-handed 310
Helix 45	AE9	C	236	246	Right-handed alpha
Helix 46	AF1	C	528	532	Right-handed 310
Helix 47	AF2	C	541	545	Right-handed 310
Helix 48	AF3	C	558	562	Right-handed 310
Helix 49	AF4	C	563	569	Right-handed alpha
Helix 50	AF5	C	574	591	Right-handed alpha
Helix 51	AF6	C	604	618	Right-handed alpha
Helix 52	AF7	C	621	626	Right-handed alpha
Helix 53	AF8	C	630	635	Right-handed alpha
Helix 54	AF9	C	651	659	Right-handed alpha
Helix 55	AG1	C	663	675	Right-handed alpha
Helix 56	AG2	C	676	679	Right-handed 310
Helix 57	AG3	C	681	685	Right-handed 310
Helix 58	AG4	C	687	693	Right-handed alpha
Helix 59	AG5	C	694	698	Right-handed 310
Helix 60	AG6	D	126	146	Right-handed alpha
Helix 61	AG7	D	150	156	Right-handed 310
Helix 62	AG8	D	197	218	Right-handed alpha
Helix 63	AG9	D	227	229	Right-handed 310
Helix 64	AH1	D	236	251	Right-handed alpha
Helix 65	AH2	D	528	532	Right-handed 310
Helix 66	AH3	D	558	562	Right-handed 310
Helix 67	AH4	D	563	569	Right-handed alpha
Helix 68	AH5	D	574	591	Right-handed alpha
Helix 69	AH6	D	604	618	Right-handed alpha
Helix 70	AH7	D	621	626	Right-handed alpha
Helix 71	AH8	D	630	635	Right-handed alpha
Helix 72	AH9	D	651	659	Right-handed alpha
Helix 73	AI1	D	663	675	Right-handed alpha
Helix 74	AI2	D	676	679	Right-handed 310
Helix 75	AI3	D	681	685	Right-handed 310
Helix 76	AI4	D	687	693	Right-handed alpha
Helix 77	AI5	D	694	698	Right-handed 310

There are 12 sheets in PDB entry 5MYV. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	87	88	first strand
Strand 2	A	92	100	anti-parallel
Strand 3	A	104	111	anti-parallel
Strand 4	A	116	123	anti-parallel
Strand 5	A	172	178	anti-parallel
Strand 6	A	159	165	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	221	222	first strand
Strand 2	A	546	547	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	537	539	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	87	88	first strand
Strand 2	B	92	100	anti-parallel
Strand 3	B	104	111	anti-parallel
Strand 4	B	116	123	anti-parallel
Strand 5	B	172	178	anti-parallel
Strand 6	B	159	165	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	221	222	first strand
Strand 2	B	546	547	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	537	539	anti-parallel

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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	87	88	first strand
Strand 2	C	92	100	anti-parallel
Strand 3	C	104	111	anti-parallel
Strand 4	C	116	123	anti-parallel
Strand 5	C	172	178	anti-parallel
Strand 6	C	159	165	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	221	222	first strand
Strand 2	C	546	547	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	537	539	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	87	88	first strand
Strand 2	D	92	100	anti-parallel
Strand 3	D	104	111	anti-parallel
Strand 4	D	116	123	anti-parallel
Strand 5	D	172	178	anti-parallel
Strand 6	D	159	165	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	221	222	first strand
Strand 2	D	546	547	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	233	first strand
Strand 2	D	537	539	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MYV

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MYV