Analysis of interatomic Contacts of Structural Units in PDB entry:
5MZ4

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MZ4 entry

There are 2 chains in PDB entry 5MZ4 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	SER 1	LEU 732
B	LEU -4	ALA 631

There are 50 helices in PDB entry 5MZ4. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	22	26	Right-handed 310
Helix 2	AA2	A	58	67	Right-handed alpha
Helix 3	AA3	A	108	113	Right-handed alpha
Helix 4	AA4	A	196	201	Right-handed 310
Helix 5	AA5	A	245	256	Right-handed alpha
Helix 6	AA6	A	268	272	Right-handed 310
Helix 7	AA7	A	275	286	Right-handed alpha
Helix 8	AA8	A	297	312	Right-handed alpha
Helix 9	AA9	A	338	343	Right-handed alpha
Helix 10	AB1	A	345	354	Right-handed alpha
Helix 11	AB2	A	368	380	Right-handed alpha
Helix 12	AB3	A	381	385	Right-handed 310
Helix 13	AB4	A	436	440	Right-handed 310
Helix 14	AB5	A	448	462	Right-handed alpha
Helix 15	AB6	A	478	483	Right-handed alpha
Helix 16	AB7	A	537	546	Right-handed alpha
Helix 17	AB8	A	569	577	Right-handed alpha
Helix 18	AB9	A	578	581	Right-handed 310
Helix 19	AC1	A	586	599	Right-handed alpha
Helix 20	AC2	A	604	619	Right-handed alpha
Helix 21	AC3	A	624	634	Right-handed alpha
Helix 22	AC4	A	639	646	Right-handed alpha
Helix 23	AC5	A	690	699	Right-handed alpha
Helix 24	AC6	A	708	722	Right-handed alpha
Helix 25	AC7	B	22	26	Right-handed 310
Helix 26	AC8	B	58	67	Right-handed alpha
Helix 27	AC9	B	108	113	Right-handed alpha
Helix 28	AD1	B	196	201	Right-handed 310
Helix 29	AD2	B	248	256	Right-handed alpha
Helix 30	AD3	B	275	286	Right-handed alpha
Helix 31	AD4	B	297	312	Right-handed alpha
Helix 32	AD5	B	338	342	Right-handed alpha
Helix 33	AD6	B	345	354	Right-handed alpha
Helix 34	AD7	B	363	367	Right-handed 310
Helix 35	AD8	B	368	380	Right-handed alpha
Helix 36	AD9	B	381	385	Right-handed 310
Helix 37	AE1	B	436	440	Right-handed 310
Helix 38	AE2	B	448	462	Right-handed alpha
Helix 39	AE3	B	476	481	Right-handed alpha
Helix 40	AE4	B	492	496	Right-handed 310
Helix 41	AE5	B	536	545	Right-handed alpha
Helix 42	AE6	B	568	576	Right-handed alpha
Helix 43	AE7	B	577	580	Right-handed 310
Helix 44	AE8	B	585	598	Right-handed alpha
Helix 45	AE9	B	603	618	Right-handed alpha
Helix 46	AF1	B	623	633	Right-handed alpha
Helix 47	AF2	B	638	645	Right-handed alpha
Helix 48	AF3	B	689	698	Right-handed alpha
Helix 49	AF4	B	707	720	Right-handed alpha
Helix 50	AF5	B	721	723	Right-handed 310

There are 18 sheets in PDB entry 5MZ4. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	54	first strand
Strand 2	A	6	19	anti-parallel
Strand 3	A	117	121	parallel
Strand 4	A	124	128	anti-parallel
Strand 5	A	75	76	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	44	54	first strand
Strand 2	A	6	19	anti-parallel
Strand 3	A	85	91	anti-parallel
Strand 4	A	94	101	anti-parallel
Strand 5	A	104	107	anti-parallel
Strand 6	A	139	143	anti-parallel
Strand 7	A	132	134	anti-parallel

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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	216	219	first strand
Strand 2	A	207	210	anti-parallel
Strand 3	A	155	164	anti-parallel
Strand 4	A	170	179	anti-parallel
Strand 5	A	182	186	anti-parallel
Strand 6	A	232	234	anti-parallel
Strand 7	A	222	226	anti-parallel
Strand 8	B	726	730	anti-parallel

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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	262	266	first strand
Strand 2	A	387	391	parallel
Strand 3	A	358	362	parallel
Strand 4	A	291	295	parallel
Strand 5	A	333	337	parallel
Strand 6	A	317	320	parallel

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There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	407	411	first strand
Strand 2	A	554	558	parallel
Strand 3	A	506	509	parallel
Strand 4	A	442	446	parallel
Strand 5	A	488	492	parallel
Strand 6	A	466	469	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	425	428	first strand
Strand 2	A	431	434	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	512	520	first strand
Strand 2	A	527	535	anti-parallel
Strand 3	A	687	689	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	654	first strand
Strand 2	A	676	677	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	656	659	first strand
Strand 2	A	662	667	anti-parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	728	731	first strand
Strand 2	B	222	225	anti-parallel
Strand 3	B	232	234	anti-parallel
Strand 4	B	182	186	anti-parallel
Strand 5	B	170	179	anti-parallel
Strand 6	B	155	164	anti-parallel
Strand 7	B	207	210	anti-parallel
Strand 8	B	216	219	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	44	54	first strand
Strand 2	B	6	19	anti-parallel
Strand 3	B	85	91	anti-parallel
Strand 4	B	94	101	anti-parallel
Strand 5	B	104	107	anti-parallel
Strand 6	B	139	143	anti-parallel
Strand 7	B	132	134	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	75	76	first strand
Strand 2	B	124	128	parallel
Strand 3	B	117	121	anti-parallel

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There are 6 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	262	266	first strand
Strand 2	B	387	391	parallel
Strand 3	B	358	361	parallel
Strand 4	B	291	295	parallel
Strand 5	B	333	337	parallel
Strand 6	B	317	320	parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	410	411	first strand
Strand 2	B	556	557	parallel
Strand 3	B	507	508	parallel
Strand 4	B	444	445	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	425	428	first strand
Strand 2	B	431	434	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	511	519	first strand
Strand 2	B	526	534	anti-parallel
Strand 3	B	686	688	parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	652	653	first strand
Strand 2	B	675	676	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	655	658	first strand
Strand 2	B	661	666	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MZ4

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MZ4