Analysis of interatomic Contacts of Structural Units in PDB entry:
5MZH

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5MZH entry

There are 2 chains in PDB entry 5MZH (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 4	THR 420
B	LEU 5	SER 422

There are 6 helices in PDB entry 5MZH. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	42	54	Right-handed alpha
Helix 2	AA2	A	58	60	Right-handed 310
Helix 3	AA3	A	61	77	Right-handed alpha
Helix 4	AA4	B	42	54	Right-handed alpha
Helix 5	AA5	B	58	60	Right-handed 310
Helix 6	AA6	B	61	77	Right-handed alpha

There are 18 sheets in PDB entry 5MZH. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	11	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	29	33	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	85	91	first strand
Strand 2	A	412	417	anti-parallel
Strand 3	A	403	408	anti-parallel
Strand 4	A	392	397	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	102	first strand
Strand 2	A	108	113	anti-parallel
Strand 3	A	118	122	anti-parallel
Strand 4	A	128	132	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	139	144	first strand
Strand 2	A	151	156	anti-parallel
Strand 3	A	161	165	anti-parallel
Strand 4	A	171	175	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	182	187	first strand
Strand 2	A	193	198	anti-parallel
Strand 3	A	203	207	anti-parallel
Strand 4	A	213	217	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	224	226	first strand
Strand 2	A	235	240	anti-parallel
Strand 3	A	245	249	anti-parallel
Strand 4	A	255	259	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	266	271	first strand
Strand 2	A	277	282	anti-parallel
Strand 3	A	287	291	anti-parallel
Strand 4	A	297	301	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	313	first strand
Strand 2	A	319	324	anti-parallel
Strand 3	A	329	333	anti-parallel
Strand 4	A	339	343	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	350	355	first strand
Strand 2	A	361	366	anti-parallel
Strand 3	A	370	375	anti-parallel
Strand 4	A	381	386	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	28	33	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	84	91	first strand
Strand 2	B	412	418	anti-parallel
Strand 3	B	403	408	anti-parallel
Strand 4	B	392	397	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	102	first strand
Strand 2	B	108	113	anti-parallel
Strand 3	B	117	122	anti-parallel
Strand 4	B	128	133	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	139	144	first strand
Strand 2	B	151	156	anti-parallel
Strand 3	B	160	165	anti-parallel
Strand 4	B	171	176	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	182	187	first strand
Strand 2	B	193	198	anti-parallel
Strand 3	B	203	207	anti-parallel
Strand 4	B	213	217	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	229	first strand
Strand 2	B	235	240	anti-parallel
Strand 3	B	245	249	anti-parallel
Strand 4	B	255	259	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	266	271	first strand
Strand 2	B	277	282	anti-parallel
Strand 3	B	287	291	anti-parallel
Strand 4	B	297	301	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	313	first strand
Strand 2	B	319	324	anti-parallel
Strand 3	B	329	333	anti-parallel
Strand 4	B	339	343	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	355	first strand
Strand 2	B	361	366	anti-parallel
Strand 3	B	371	375	anti-parallel
Strand 4	B	381	385	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5MZH

Analysis of interatomic Contacts of Structural Units in PDB entry:
5MZH