Analysis of interatomic Contacts of Structural Units in PDB entry:
5N03

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N03 entry

There are 4 chains in PDB entry 5N03 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	THR 261
C	MET 1	ARG 263
D	ASP 6	GLY 245
B	ASP 6	ALA 246

There are 37 helices in PDB entry 5N03. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	15	Right-handed alpha
Helix 2	AA2	A	33	43	Right-handed alpha
Helix 3	AA3	A	55	65	Right-handed alpha
Helix 4	AA4	A	87	97	Right-handed alpha
Helix 5	AA5	A	105	118	Right-handed alpha
Helix 6	AA6	A	131	137	Right-handed 310
Helix 7	AA7	A	182	190	Right-handed alpha
Helix 8	AA8	A	210	214	Right-handed 310
Helix 9	AA9	A	236	247	Right-handed alpha
Helix 10	AB1	A	248	250	Right-handed 310
Helix 11	AB2	A	251	261	Right-handed alpha
Helix 12	AB3	C	8	15	Right-handed alpha
Helix 13	AB4	C	33	43	Right-handed alpha
Helix 14	AB5	C	55	65	Right-handed alpha
Helix 15	AB6	C	87	97	Right-handed alpha
Helix 16	AB7	C	105	118	Right-handed alpha
Helix 17	AB8	C	131	137	Right-handed 310
Helix 18	AB9	C	182	190	Right-handed alpha
Helix 19	AC1	C	210	214	Right-handed 310
Helix 20	AC2	C	236	249	Right-handed alpha
Helix 21	AC3	C	251	263	Right-handed alpha
Helix 22	AC4	D	8	19	Right-handed alpha
Helix 23	AC5	D	33	46	Right-handed alpha
Helix 24	AC6	D	73	78	Right-handed 310
Helix 25	AC7	D	85	95	Right-handed alpha
Helix 26	AC8	D	134	142	Right-handed alpha
Helix 27	AC9	D	199	206	Right-handed alpha
Helix 28	AD1	D	224	235	Right-handed alpha
Helix 29	AD2	D	238	244	Right-handed alpha
Helix 30	AD3	B	8	19	Right-handed alpha
Helix 31	AD4	B	33	46	Right-handed alpha
Helix 32	AD5	B	73	78	Right-handed 310
Helix 33	AD6	B	85	95	Right-handed alpha
Helix 34	AD7	B	134	142	Right-handed alpha
Helix 35	AD8	B	199	206	Right-handed alpha
Helix 36	AD9	B	224	235	Right-handed alpha
Helix 37	AE1	B	239	244	Right-handed alpha

There are 15 sheets in PDB entry 5N03. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	5	6	first strand
Strand 2	A	216	219	parallel
Strand 3	A	192	197	parallel
Strand 4	A	161	166	parallel
Strand 5	A	21	24	parallel
Strand 6	A	48	51	parallel
Strand 7	A	68	73	parallel
Strand 8	A	100	103	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	77	80	first strand
Strand 2	A	83	86	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	122	124	first strand
Strand 2	A	150	155	anti-parallel
Strand 3	A	141	143	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	168	169	first strand
Strand 2	A	175	176	anti-parallel

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There are 8 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	5	6	first strand
Strand 2	C	216	219	parallel
Strand 3	C	192	197	parallel
Strand 4	C	161	166	parallel
Strand 5	C	21	24	parallel
Strand 6	C	48	51	parallel
Strand 7	C	68	73	parallel
Strand 8	C	100	103	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	77	80	first strand
Strand 2	C	83	86	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	122	124	first strand
Strand 2	C	150	155	anti-parallel
Strand 3	C	141	143	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	175	176	first strand
Strand 2	C	168	170	anti-parallel
Strand 3	C	200	201	parallel

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There are 10 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	82	83	first strand
Strand 2	D	59	60	anti-parallel
Strand 3	D	52	55	anti-parallel
Strand 4	D	26	29	parallel
Strand 5	D	100	103	parallel
Strand 6	D	144	149	parallel
Strand 7	D	173	177	parallel
Strand 8	D	180	185	anti-parallel
Strand 9	D	188	194	anti-parallel
Strand 10	D	211	219	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	107	108	first strand
Strand 2	D	114	115	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	118	120	first strand
Strand 2	D	125	128	anti-parallel

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There are 8 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	53	first strand
Strand 2	B	26	29	parallel
Strand 3	B	100	104	parallel
Strand 4	B	144	149	parallel
Strand 5	B	173	177	parallel
Strand 6	B	180	185	anti-parallel
Strand 7	B	188	194	anti-parallel
Strand 8	B	211	219	parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	59	60	first strand
Strand 2	B	82	83	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	114	115	first strand
Strand 2	B	107	109	anti-parallel
Strand 3	B	157	158	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	118	120	first strand
Strand 2	B	125	128	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N03

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N03