Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N0B entry

There is 1 chain in PDB entry 5N0B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1ASP 1315
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 39 helices in PDB entry 5N0B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
24 28Right-handed 310
Helix 2
AA2
A
55 60Right-handed 310
Helix 3
AA3
A
80 100Right-handed alpha
Helix 4
AA4
A
101 114Right-handed alpha
Helix 5
AA5
A
226 243Right-handed alpha
Helix 6
AA6
A
268 276Right-handed alpha
Helix 7
AA7
A
277 283Right-handed 310
Helix 8
AA8
A
284 308Right-handed alpha
Helix 9
AA9
A
318 331Right-handed alpha
Helix 10
AB1
A
343 357Right-handed alpha
Helix 11
AB2
A
359 368Right-handed alpha
Helix 12
AB3
A
402 406Right-handed 310
Helix 13
AB4
A
408 412Right-handed 310
Helix 14
AB5
A
473 475Right-handed 310
Helix 15
AB6
A
480 484Right-handed 310
Helix 16
AB7
A
486 490Right-handed 310
Helix 17
AB8
A
508 519Right-handed alpha
Helix 18
AB9
A
559 566Right-handed alpha
Helix 19
AC1
A
581 588Right-handed alpha
Helix 20
AC2
A
596 605Right-handed alpha
Helix 21
AC3
A
611 628Right-handed alpha
Helix 22
AC4
A
645 651Right-handed alpha
Helix 23
AC5
A
660 669Right-handed alpha
Helix 24
AC6
A
670 674Right-handed 310
Helix 25
AC7
A
701 730Right-handed alpha
Helix 26
AC8
A
730 763Right-handed alpha
Helix 27
AC9
A
767 807Right-handed alpha
Helix 28
AD1
A
807 835Right-handed alpha
Helix 29
AD2
A
836 839Right-handed 310
Helix 30
AD3
A
846 851Right-handed alpha
Helix 31
AD4
A
852 857Right-handed alpha
Helix 32
AD5
A
876 884Right-handed alpha
Helix 33
AD6
A
938 942Right-handed 310
Helix 34
AD7
A
962 970Right-handed alpha
Helix 35
AD8
A
1021 1025Right-handed 310
Helix 36
AD9
A
1097 1108Right-handed alpha
Helix 37
AE1
A
1134 1136Right-handed 310
Helix 38
AE2
A
1219 1221Right-handed 310
Helix 39
AE3
A
1288 1293Right-handed 310
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There are 18 sheets in PDB entry 5N0B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
194 197anti-parallel
Strand 3
A
157 160parallel
Strand 4
A
43 46parallel
Strand 5
A
34 40anti-parallel
Strand 6
A
19 23anti-parallel
Strand 7
A
136 140anti-parallel
Strand 8
A
150 154anti-parallel
Strand 9
A
528 529anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
546 547anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
71 72first strand
Strand 2
A
431 432anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
127 128first strand
Strand 2
A
311 312parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
176 177first strand
Strand 2
A
182 183anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
202 203first strand
Strand 2
A
383 384anti-parallel
Strand 3
A
424 425anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
205 207first strand
Strand 2
A
222 224anti-parallel
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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
214 215first strand
Strand 2
A
905 908parallel
Strand 3
A
933 936anti-parallel
Strand 4
A
1069 1075anti-parallel
Strand 5
A
973 978anti-parallel
Strand 6
A
990 996anti-parallel
Strand 7
A
999 1005anti-parallel
Strand 8
A
1011 1017anti-parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
332 334first strand
Strand 2
A
340 342anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
468 471first strand
Strand 2
A
435 439anti-parallel
Strand 3
A
551 554parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
493 494first strand
Strand 2
A
689 690parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
591 593parallel
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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
885 892anti-parallel
Strand 3
A
1083 1092anti-parallel
Strand 4
A
921 926anti-parallel
Strand 5
A
913 916anti-parallel
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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
895 898first strand
Strand 2
A
885 892anti-parallel
Strand 3
A
1083 1092anti-parallel
Strand 4
A
950 957anti-parallel
Strand 5
A
1032 1038anti-parallel
Strand 6
A
1043 1048anti-parallel
Strand 7
A
1051 1057anti-parallel
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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1217 1218first strand
Strand 2
A
1222 1224anti-parallel
Strand 3
A
1281 1287anti-parallel
Strand 4
A
1264 1273anti-parallel
Strand 5
A
1254 1258anti-parallel
Strand 6
A
1239 1243anti-parallel
Strand 7
A
1194 1201anti-parallel
Strand 8
A
1206 1212anti-parallel
Strand 9
A
1236 1237anti-parallel
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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1226 1227first strand
Strand 2
A
1206 1212anti-parallel
Strand 3
A
1194 1201anti-parallel
Strand 4
A
1174 1179anti-parallel
Strand 5
A
1127 1132anti-parallel
Strand 6
A
1303 1306anti-parallel
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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1138 1142first strand
Strand 2
A
1149 1153anti-parallel
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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1156 1159first strand
Strand 2
A
1164 1167anti-parallel
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