Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0C

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N0C entry

There are 2 chains in PDB entry 5N0C (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	ASP 1315
B	MET 1	ASP 1315

There are 71 helices in PDB entry 5N0C. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	24	28	Right-handed 310
Helix 2	AA2	A	55	60	Right-handed 310
Helix 3	AA3	A	80	100	Right-handed alpha
Helix 4	AA4	A	101	114	Right-handed alpha
Helix 5	AA5	A	226	243	Right-handed alpha
Helix 6	AA6	A	268	276	Right-handed alpha
Helix 7	AA7	A	277	283	Right-handed 310
Helix 8	AA8	A	284	308	Right-handed alpha
Helix 9	AA9	A	318	331	Right-handed alpha
Helix 10	AB1	A	343	357	Right-handed alpha
Helix 11	AB2	A	359	367	Right-handed alpha
Helix 12	AB3	A	402	406	Right-handed 310
Helix 13	AB4	A	408	412	Right-handed 310
Helix 14	AB5	A	473	475	Right-handed 310
Helix 15	AB6	A	486	490	Right-handed 310
Helix 16	AB7	A	508	519	Right-handed alpha
Helix 17	AB8	A	559	566	Right-handed alpha
Helix 18	AB9	A	581	588	Right-handed alpha
Helix 19	AC1	A	596	605	Right-handed alpha
Helix 20	AC2	A	611	628	Right-handed alpha
Helix 21	AC3	A	645	651	Right-handed alpha
Helix 22	AC4	A	660	669	Right-handed alpha
Helix 23	AC5	A	670	674	Right-handed 310
Helix 24	AC6	A	696	730	Right-handed alpha
Helix 25	AC7	A	730	763	Right-handed alpha
Helix 26	AC8	A	767	807	Right-handed alpha
Helix 27	AC9	A	807	835	Right-handed alpha
Helix 28	AD1	A	839	857	Right-handed alpha
Helix 29	AD2	A	876	884	Right-handed alpha
Helix 30	AD3	A	938	942	Right-handed 310
Helix 31	AD4	A	962	970	Right-handed alpha
Helix 32	AD5	A	1021	1025	Right-handed 310
Helix 33	AD6	A	1097	1109	Right-handed alpha
Helix 34	AD7	A	1219	1221	Right-handed 310
Helix 35	AD8	A	1288	1293	Right-handed 310
Helix 36	AD9	B	24	28	Right-handed 310
Helix 37	AE1	B	55	60	Right-handed 310
Helix 38	AE2	B	80	101	Right-handed alpha
Helix 39	AE3	B	101	114	Right-handed alpha
Helix 40	AE4	B	184	188	Right-handed 310
Helix 41	AE5	B	226	243	Right-handed alpha
Helix 42	AE6	B	268	276	Right-handed alpha
Helix 43	AE7	B	277	283	Right-handed 310
Helix 44	AE8	B	284	308	Right-handed alpha
Helix 45	AE9	B	318	331	Right-handed alpha
Helix 46	AF1	B	343	357	Right-handed alpha
Helix 47	AF2	B	359	368	Right-handed alpha
Helix 48	AF3	B	408	412	Right-handed 310
Helix 49	AF4	B	419	423	Right-handed 310
Helix 50	AF5	B	473	475	Right-handed 310
Helix 51	AF6	B	486	490	Right-handed 310
Helix 52	AF7	B	508	519	Right-handed alpha
Helix 53	AF8	B	559	566	Right-handed alpha
Helix 54	AF9	B	581	588	Right-handed alpha
Helix 55	AG1	B	596	605	Right-handed alpha
Helix 56	AG2	B	611	629	Right-handed alpha
Helix 57	AG3	B	645	651	Right-handed alpha
Helix 58	AG4	B	660	669	Right-handed alpha
Helix 59	AG5	B	670	674	Right-handed 310
Helix 60	AG6	B	699	730	Right-handed alpha
Helix 61	AG7	B	730	761	Right-handed alpha
Helix 62	AG8	B	767	807	Right-handed alpha
Helix 63	AG9	B	807	835	Right-handed alpha
Helix 64	AH1	B	838	842	Right-handed 310
Helix 65	AH2	B	844	852	Right-handed alpha
Helix 66	AH3	B	876	884	Right-handed alpha
Helix 67	AH4	B	938	942	Right-handed 310
Helix 68	AH5	B	962	970	Right-handed alpha
Helix 69	AH6	B	1021	1025	Right-handed 310
Helix 70	AH7	B	1097	1108	Right-handed alpha
Helix 71	AH8	B	1288	1293	Right-handed 310

There are 36 sheets in PDB entry 5N0C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 9 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	170	173	first strand
Strand 2	A	194	197	anti-parallel
Strand 3	A	157	160	parallel
Strand 4	A	43	46	parallel
Strand 5	A	34	40	anti-parallel
Strand 6	A	19	23	anti-parallel
Strand 7	A	136	142	anti-parallel
Strand 8	A	148	154	anti-parallel
Strand 9	A	528	529	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	64	65	first strand
Strand 2	A	546	547	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	71	72	first strand
Strand 2	A	431	432	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	127	128	first strand
Strand 2	A	311	312	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	176	178	first strand
Strand 2	A	181	183	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	202	203	first strand
Strand 2	A	383	384	anti-parallel
Strand 3	A	424	425	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	205	207	first strand
Strand 2	A	222	224	anti-parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	214	215	first strand
Strand 2	A	905	908	parallel
Strand 3	A	933	936	anti-parallel
Strand 4	A	1069	1075	anti-parallel
Strand 5	A	973	978	anti-parallel
Strand 6	A	990	996	anti-parallel
Strand 7	A	999	1005	anti-parallel
Strand 8	A	1011	1017	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	332	334	first strand
Strand 2	A	340	342	anti-parallel

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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	465	471	first strand
Strand 2	A	435	441	anti-parallel
Strand 3	A	552	554	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	493	494	first strand
Strand 2	A	689	690	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	577	579	first strand
Strand 2	A	591	593	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	885	892	anti-parallel
Strand 3	A	1083	1092	anti-parallel
Strand 4	A	921	926	anti-parallel
Strand 5	A	913	916	anti-parallel

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There are 7 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	895	898	first strand
Strand 2	A	885	892	anti-parallel
Strand 3	A	1083	1092	anti-parallel
Strand 4	A	950	957	anti-parallel
Strand 5	A	1032	1038	anti-parallel
Strand 6	A	1043	1048	anti-parallel
Strand 7	A	1051	1057	anti-parallel

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There are 9 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1217	1218	first strand
Strand 2	A	1222	1224	anti-parallel
Strand 3	A	1281	1287	anti-parallel
Strand 4	A	1264	1273	anti-parallel
Strand 5	A	1254	1258	anti-parallel
Strand 6	A	1239	1243	anti-parallel
Strand 7	A	1195	1202	anti-parallel
Strand 8	A	1205	1212	anti-parallel
Strand 9	A	1236	1237	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1226	1227	first strand
Strand 2	A	1205	1212	anti-parallel
Strand 3	A	1195	1202	anti-parallel
Strand 4	A	1174	1179	anti-parallel
Strand 5	A	1127	1132	anti-parallel
Strand 6	A	1303	1306	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1138	1142	first strand
Strand 2	A	1149	1153	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1156	1159	first strand
Strand 2	A	1164	1167	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	170	173	first strand
Strand 2	B	194	197	anti-parallel
Strand 3	B	157	161	parallel
Strand 4	B	43	49	parallel
Strand 5	B	34	40	anti-parallel
Strand 6	B	19	23	anti-parallel
Strand 7	B	136	140	anti-parallel
Strand 8	B	150	154	anti-parallel
Strand 9	B	528	529	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	64	65	first strand
Strand 2	B	546	547	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	71	72	first strand
Strand 2	B	431	432	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	128	first strand
Strand 2	B	311	312	parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	178	first strand
Strand 2	B	181	183	anti-parallel

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There are 3 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	202	203	first strand
Strand 2	B	383	384	anti-parallel
Strand 3	B	424	425	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	205	207	first strand
Strand 2	B	222	224	anti-parallel

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There are 8 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	213	215	first strand
Strand 2	B	905	908	parallel
Strand 3	B	933	936	anti-parallel
Strand 4	B	1069	1075	anti-parallel
Strand 5	B	973	978	anti-parallel
Strand 6	B	990	996	anti-parallel
Strand 7	B	999	1005	anti-parallel
Strand 8	B	1011	1017	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	332	334	first strand
Strand 2	B	340	342	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	466	471	first strand
Strand 2	B	435	440	anti-parallel
Strand 3	B	551	554	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	493	494	first strand
Strand 2	B	689	690	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	577	579	first strand
Strand 2	B	591	593	parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	885	892	anti-parallel
Strand 3	B	1083	1092	anti-parallel
Strand 4	B	921	926	anti-parallel
Strand 5	B	913	916	anti-parallel

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There are 7 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	895	898	first strand
Strand 2	B	885	892	anti-parallel
Strand 3	B	1083	1092	anti-parallel
Strand 4	B	950	957	anti-parallel
Strand 5	B	1032	1038	anti-parallel
Strand 6	B	1043	1048	anti-parallel
Strand 7	B	1051	1057	anti-parallel

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There are 9 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1217	1218	first strand
Strand 2	B	1222	1224	anti-parallel
Strand 3	B	1281	1287	anti-parallel
Strand 4	B	1264	1273	anti-parallel
Strand 5	B	1254	1258	anti-parallel
Strand 6	B	1240	1243	anti-parallel
Strand 7	B	1194	1200	anti-parallel
Strand 8	B	1207	1212	anti-parallel
Strand 9	B	1236	1237	anti-parallel

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There are 6 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1226	1227	first strand
Strand 2	B	1207	1212	anti-parallel
Strand 3	B	1194	1200	anti-parallel
Strand 4	B	1175	1179	anti-parallel
Strand 5	B	1127	1132	anti-parallel
Strand 6	B	1303	1306	anti-parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1138	1142	first strand
Strand 2	B	1149	1153	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1156	1159	first strand
Strand 2	B	1164	1167	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N0C

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0C