Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0F


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N0F entry

There are 2 chains in PDB entry 5N0F (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 39GLY 374
B
 HIS 19GLY 374
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 25 helices in PDB entry 5N0F. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
39 52Right-handed alpha
Helix 2
AA2
A
71 89Right-handed alpha
Helix 3
AA3
A
91 114Right-handed alpha
Helix 4
AA4
A
122 141Right-handed alpha
Helix 5
AA5
A
142 161Right-handed alpha
Helix 6
AA6
A
164 168Right-handed 310
Helix 7
AA7
A
182 200Right-handed alpha
Helix 8
AA8
A
201 219Right-handed alpha
Helix 9
AA9
A
241 260Right-handed alpha
Helix 10
AB1
A
262 279Right-handed alpha
Helix 11
AB2
A
298 317Right-handed alpha
Helix 12
AB3
A
319 339Right-handed alpha
Helix 13
AB4
A
361 373Right-handed alpha
Helix 14
AB5
B
40 52Right-handed alpha
Helix 15
AB6
B
71 89Right-handed alpha
Helix 16
AB7
B
91 114Right-handed alpha
Helix 17
AB8
B
122 141Right-handed alpha
Helix 18
AB9
B
142 161Right-handed alpha
Helix 19
AC1
B
182 200Right-handed alpha
Helix 20
AC2
B
201 219Right-handed alpha
Helix 21
AC3
B
241 260Right-handed alpha
Helix 22
AC4
B
261 279Right-handed alpha
Helix 23
AC5
B
298 317Right-handed alpha
Helix 24
AC6
B
319 340Right-handed alpha
Helix 25
AC7
B
361 373Right-handed alpha
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There are 4 sheets in PDB entry 5N0F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
53 54first strand
Strand 2
A
59 60anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
179 181first strand
Strand 2
A
229 231anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
59 60anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
179 181first strand
Strand 2
B
229 231anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il