Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0J


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N0J entry

There are 2 chains in PDB entry 5N0J (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 15ALA 318
B
 ASP 12ARG 334
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5N0J. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
27 40Right-handed alpha
Helix 2
AA2
A
52 57Right-handed 310
Helix 3
AA3
A
69 84Right-handed alpha
Helix 4
AA4
A
139 145Right-handed alpha
Helix 5
AA5
A
154 159Right-handed alpha
Helix 6
AA6
A
160 163Right-handed 310
Helix 7
AA7
A
173 178Right-handed alpha
Helix 8
AA8
A
179 184Right-handed alpha
Helix 9
AA9
A
201 211Right-handed alpha
Helix 10
AB1
A
256 263Right-handed 310
Helix 11
AB2
A
288 291Right-handed 310
Helix 12
AB3
A
296 318Right-handed alpha
Helix 13
AB4
B
13 17Right-handed alpha
Helix 14
AB5
B
27 40Right-handed alpha
Helix 15
AB6
B
52 57Right-handed 310
Helix 16
AB7
B
69 85Right-handed alpha
Helix 17
AB8
B
140 145Right-handed alpha
Helix 18
AB9
B
154 159Right-handed alpha
Helix 19
AC1
B
160 163Right-handed 310
Helix 20
AC2
B
174 178Right-handed 310
Helix 21
AC3
B
179 184Right-handed alpha
Helix 22
AC4
B
201 212Right-handed alpha
Helix 23
AC5
B
256 263Right-handed 310
Helix 24
AC6
B
288 291Right-handed 310
Helix 25
AC7
B
296 318Right-handed alpha
Helix 26
AC8
B
324 334Right-handed alpha
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There are 12 sheets in PDB entry 5N0J. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
44 48parallel
Strand 3
A
18 24parallel
Strand 4
A
118 126parallel
Strand 5
A
103 108anti-parallel
Strand 6
A
92 98anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 90first strand
Strand 2
A
44 48parallel
Strand 3
A
18 24parallel
Strand 4
A
118 126parallel
Strand 5
A
284 286parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
131 132first strand
Strand 2
A
252 253anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
151 152first strand
Strand 2
A
245 249parallel
Strand 3
A
167 171parallel
Strand 4
A
190 193parallel
Strand 5
A
215 216parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 226first strand
Strand 2
A
229 235anti-parallel
Strand 3
A
240 242anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
266 267first strand
Strand 2
A
270 271anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
44 48parallel
Strand 3
B
18 24parallel
Strand 4
B
118 126parallel
Strand 5
B
103 108anti-parallel
Strand 6
B
92 98anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
87 90first strand
Strand 2
B
44 48parallel
Strand 3
B
18 24parallel
Strand 4
B
118 126parallel
Strand 5
B
284 286parallel
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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
131 132first strand
Strand 2
B
252 253anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
151 152first strand
Strand 2
B
245 249parallel
Strand 3
B
167 171parallel
Strand 4
B
190 193parallel
Strand 5
B
215 216parallel
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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 226first strand
Strand 2
B
229 235anti-parallel
Strand 3
B
240 242anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
266 267first strand
Strand 2
B
270 271anti-parallel
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