Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N0K entry

There is 1 chain in PDB entry 5N0K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ARG 1ASN 1034
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 26 helices in PDB entry 5N0K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
29 38Right-handed alpha
Helix 2
AA2
A
68 72Right-handed 310
Helix 3
AA3
A
108 112Right-handed 310
Helix 4
AA4
A
164 172Right-handed alpha
Helix 5
AA5
A
211 220Right-handed alpha
Helix 6
AA6
A
230 237Right-handed alpha
Helix 7
AA7
A
320 325Right-handed alpha
Helix 8
AA8
A
385 390Right-handed alpha
Helix 9
AA9
A
423 427Right-handed 310
Helix 10
AB1
A
463 467Right-handed 310
Helix 11
AB2
A
497 501Right-handed 310
Helix 12
AB3
A
519 527Right-handed alpha
Helix 13
AB4
A
563 565Right-handed 310
Helix 14
AB5
A
567 576Right-handed alpha
Helix 15
AB6
A
586 593Right-handed alpha
Helix 16
AB7
A
676 682Right-handed alpha
Helix 17
AB8
A
724 735Right-handed alpha
Helix 18
AB9
A
777 781Right-handed 310
Helix 19
AC1
A
837 841Right-handed 310
Helix 20
AC2
A
859 867Right-handed alpha
Helix 21
AC3
A
901 903Right-handed 310
Helix 22
AC4
A
905 914Right-handed alpha
Helix 23
AC5
A
916 920Right-handed 310
Helix 24
AC6
A
924 931Right-handed alpha
Helix 25
AC7
A
981 985Right-handed 310
Helix 26
AC8
A
1017 1023Right-handed alpha
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There are 15 sheets in PDB entry 5N0K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
47 56anti-parallel
Strand 3
A
2 15anti-parallel
Strand 4
A
85 93parallel
Strand 5
A
135 141anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
78 81first strand
Strand 2
A
174 180parallel
Strand 3
A
154 160anti-parallel
Strand 4
A
101 102anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
185 186first strand
Strand 2
A
189 190anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
238 242first strand
Strand 2
A
195 205anti-parallel
Strand 3
A
260 268parallel
Strand 4
A
301 307anti-parallel
Strand 5
A
284 286anti-parallel
Strand 6
A
289 291anti-parallel
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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
254 256first strand
Strand 2
A
329 335parallel
Strand 3
A
312 318anti-parallel
Strand 4
A
275 279anti-parallel
Strand 5
A
294 296anti-parallel
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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
399 408first strand
Strand 2
A
351 364anti-parallel
Strand 3
A
440 447parallel
Strand 4
A
489 495anti-parallel
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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
433 436first strand
Strand 2
A
529 535parallel
Strand 3
A
509 515anti-parallel
Strand 4
A
456 458anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
594 598first strand
Strand 2
A
551 561anti-parallel
Strand 3
A
617 623parallel
Strand 4
A
657 662anti-parallel
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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
610 612first strand
Strand 2
A
685 691parallel
Strand 3
A
668 674anti-parallel
Strand 4
A
631 635anti-parallel
Strand 5
A
649 652anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
640 642first strand
Strand 2
A
645 647anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
753 762first strand
Strand 2
A
706 719anti-parallel
Strand 3
A
794 802parallel
Strand 4
A
829 835anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
787 790first strand
Strand 2
A
869 875parallel
Strand 3
A
849 855anti-parallel
Strand 4
A
810 811anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
932 936first strand
Strand 2
A
888 899anti-parallel
Strand 3
A
954 961parallel
Strand 4
A
998 1003anti-parallel
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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
948 950first strand
Strand 2
A
1026 1032parallel
Strand 3
A
1009 1015anti-parallel
Strand 4
A
969 973anti-parallel
Strand 5
A
990 993anti-parallel
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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
978 980first strand
Strand 2
A
986 988anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il