Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N0P entry

There are 2 chains in PDB entry 5N0P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 7ALA 386
B
 LYS 8PRO 379
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5N0P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 36Right-handed alpha
Helix 2
AA2
A
45 56Right-handed alpha
Helix 3
AA3
A
63 66Right-handed 310
Helix 4
AA4
A
71 89Right-handed alpha
Helix 5
AA5
A
105 118Right-handed alpha
Helix 6
AA6
A
129 139Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
190 203Right-handed alpha
Helix 9
AA9
A
229 232Right-handed 310
Helix 10
AB1
A
233 238Right-handed alpha
Helix 11
AB2
A
257 264Right-handed alpha
Helix 12
AB3
A
296 305Right-handed alpha
Helix 13
AB4
A
321 334Right-handed alpha
Helix 14
AB5
A
334 344Right-handed alpha
Helix 15
AB6
A
344 351Right-handed alpha
Helix 16
AB7
A
356 366Right-handed alpha
Helix 17
AB8
A
367 377Right-handed alpha
Helix 18
AB9
A
380 385Right-handed alpha
Helix 19
AC1
B
26 36Right-handed alpha
Helix 20
AC2
B
45 56Right-handed alpha
Helix 21
AC3
B
63 66Right-handed 310
Helix 22
AC4
B
71 89Right-handed alpha
Helix 23
AC5
B
105 118Right-handed alpha
Helix 24
AC6
B
129 139Right-handed alpha
Helix 25
AC7
B
152 158Right-handed alpha
Helix 26
AC8
B
190 202Right-handed alpha
Helix 27
AC9
B
229 232Right-handed 310
Helix 28
AD1
B
233 238Right-handed alpha
Helix 29
AD2
B
257 265Right-handed alpha
Helix 30
AD3
B
296 305Right-handed alpha
Helix 31
AD4
B
306 308Right-handed 310
Helix 32
AD5
B
321 334Right-handed alpha
Helix 33
AD6
B
334 344Right-handed alpha
Helix 34
AD7
B
344 352Right-handed alpha
Helix 35
AD8
B
356 366Right-handed alpha
Helix 36
AD9
B
367 376Right-handed alpha
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There are 3 sheets in PDB entry 5N0P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
38 42parallel
Strand 3
A
92 97parallel
Strand 4
A
11 16parallel
Strand 5
A
121 124parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
245 248anti-parallel
Strand 4
A
167 171anti-parallel
Strand 5
A
147 151parallel
Strand 6
B
147 151anti-parallel
Strand 7
B
167 171parallel
Strand 8
B
245 248anti-parallel
Strand 9
B
207 212anti-parallel
Strand 10
B
222 227anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
38 42parallel
Strand 3
B
92 97parallel
Strand 4
B
11 16parallel
Strand 5
B
121 124parallel
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