Analysis of interatomic Contacts of Structural Units in PDB entry:
5N0Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N0Q entry

There are 4 chains in PDB entry 5N0Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 8SER 381
A
 VAL 409GLY 411
B
 LYS 8SER 381
B
 VAL 409GLY 411
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 36 helices in PDB entry 5N0Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
26 36Right-handed alpha
Helix 2
AA2
A
45 56Right-handed alpha
Helix 3
AA3
A
63 66Right-handed 310
Helix 4
AA4
A
71 89Right-handed alpha
Helix 5
AA5
A
105 119Right-handed alpha
Helix 6
AA6
A
129 139Right-handed alpha
Helix 7
AA7
A
152 158Right-handed alpha
Helix 8
AA8
A
172 176Right-handed 310
Helix 9
AA9
A
190 203Right-handed alpha
Helix 10
AB1
A
229 232Right-handed 310
Helix 11
AB2
A
233 238Right-handed alpha
Helix 12
AB3
A
257 264Right-handed alpha
Helix 13
AB4
A
296 309Right-handed alpha
Helix 14
AB5
A
321 334Right-handed alpha
Helix 15
AB6
A
334 344Right-handed alpha
Helix 16
AB7
A
344 352Right-handed alpha
Helix 17
AB8
A
356 366Right-handed alpha
Helix 18
AB9
A
367 376Right-handed alpha
Helix 19
AC1
B
26 36Right-handed alpha
Helix 20
AC2
B
45 56Right-handed alpha
Helix 21
AC3
B
63 66Right-handed 310
Helix 22
AC4
B
71 89Right-handed alpha
Helix 23
AC5
B
106 118Right-handed alpha
Helix 24
AC6
B
129 139Right-handed alpha
Helix 25
AC7
B
152 158Right-handed alpha
Helix 26
AC8
B
172 176Right-handed 310
Helix 27
AC9
B
190 203Right-handed alpha
Helix 28
AD1
B
229 232Right-handed 310
Helix 29
AD2
B
233 238Right-handed alpha
Helix 30
AD3
B
257 264Right-handed alpha
Helix 31
AD4
B
296 305Right-handed alpha
Helix 32
AD5
B
321 334Right-handed alpha
Helix 33
AD6
B
334 344Right-handed alpha
Helix 34
AD7
B
344 352Right-handed alpha
Helix 35
AD8
B
356 366Right-handed alpha
Helix 36
AD9
B
367 376Right-handed alpha
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There are 3 sheets in PDB entry 5N0Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 61first strand
Strand 2
A
38 42parallel
Strand 3
A
92 97parallel
Strand 4
A
11 16parallel
Strand 5
A
121 124parallel
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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
222 227first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
245 248anti-parallel
Strand 4
A
167 171anti-parallel
Strand 5
A
147 151parallel
Strand 6
B
147 151anti-parallel
Strand 7
B
167 171parallel
Strand 8
B
245 248anti-parallel
Strand 9
B
207 212anti-parallel
Strand 10
B
222 227anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
59 61first strand
Strand 2
B
38 42parallel
Strand 3
B
92 97parallel
Strand 4
B
11 16parallel
Strand 5
B
121 124parallel
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