Analysis of interatomic Contacts of Structural Units in PDB entry:
5N11


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N11 entry

There are 2 chains in PDB entry 5N11 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 20ILE 376
B
 TYR 20ILE 376
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 18 helices in PDB entry 5N11. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
41 50Right-handed 310
Helix 2
AA2
A
54 58Right-handed 310
Helix 3
AA3
A
61 68Right-handed 310
Helix 4
AA4
A
77 84Right-handed alpha
Helix 5
AA5
A
106 110Right-handed 310
Helix 6
AA6
A
118 138Right-handed alpha
Helix 7
AA7
A
300 306Right-handed alpha
Helix 8
AA8
A
330 338Right-handed alpha
Helix 9
AA9
A
339 342Right-handed 310
Helix 10
AB1
B
40 43Right-handed 310
Helix 11
AB2
B
46 50Right-handed 310
Helix 12
AB3
B
54 58Right-handed 310
Helix 13
AB4
B
61 67Right-handed 310
Helix 14
AB5
B
77 84Right-handed alpha
Helix 15
AB6
B
118 138Right-handed alpha
Helix 16
AB7
B
300 306Right-handed alpha
Helix 17
AB8
B
330 338Right-handed alpha
Helix 18
AB9
B
339 342Right-handed 310
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There are 12 sheets in PDB entry 5N11. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
70 73first strand
Strand 2
A
34 39parallel
Strand 3
A
96 100parallel
Strand 4
A
285 288parallel
Strand 5
A
311 314parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
92 93first strand
Strand 2
A
140 147anti-parallel
Strand 3
A
272 279anti-parallel
Strand 4
A
198 206anti-parallel
Strand 5
A
246 253anti-parallel
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There are 12 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
230 234anti-parallel
Strand 6
B
230 235anti-parallel
Strand 7
B
220 225anti-parallel
Strand 8
B
246 262anti-parallel
Strand 9
B
187 206anti-parallel
Strand 10
B
272 279anti-parallel
Strand 11
B
140 147anti-parallel
Strand 12
B
92 93anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
149 151first strand
Strand 2
A
187 193anti-parallel
Strand 3
A
256 262anti-parallel
Strand 4
A
221 225anti-parallel
Strand 5
A
230 234anti-parallel
Strand 6
B
230 235anti-parallel
Strand 7
B
220 225anti-parallel
Strand 8
B
246 262anti-parallel
Strand 9
B
187 206anti-parallel
Strand 10
B
150 151anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
163 164first strand
Strand 2
A
167 168anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
173 175first strand
Strand 2
A
267 269anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 353first strand
Strand 2
A
346 347anti-parallel
Strand 3
A
367 368anti-parallel
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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
70 72first strand
Strand 2
B
34 38parallel
Strand 3
B
96 100parallel
Strand 4
B
285 288parallel
Strand 5
B
311 314parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
158 159first strand
Strand 2
B
173 175anti-parallel
Strand 3
B
267 269anti-parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
163 164first strand
Strand 2
B
167 168anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
209 212first strand
Strand 2
B
215 218anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
352 353first strand
Strand 2
B
346 347anti-parallel
Strand 3
B
367 368anti-parallel
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