Analysis of interatomic Contacts of Structural Units in PDB entry:
5N1B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N1B entry

There is 1 chain in PDB entry 5N1B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 5PRO 663
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 22 helices in PDB entry 5N1B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
164 168Right-handed 310
Helix 2
AA2
A
173 180Right-handed 310
Helix 3
AA3
A
192 195Right-handed 310
Helix 4
AA4
A
207 209Right-handed 310
Helix 5
AA5
A
316 330Right-handed alpha
Helix 6
AA6
A
338 343Right-handed alpha
Helix 7
AA7
A
347 351Right-handed alpha
Helix 8
AA8
A
374 377Right-handed 310
Helix 9
AA9
A
378 384Right-handed alpha
Helix 10
AB1
A
402 408Right-handed 310
Helix 11
AB2
A
444 454Right-handed alpha
Helix 12
AB3
A
471 474Right-handed 310
Helix 13
AB4
A
494 507Right-handed alpha
Helix 14
AB5
A
526 531Right-handed alpha
Helix 15
AB6
A
532 558Right-handed alpha
Helix 16
AB7
A
560 562Right-handed 310
Helix 17
AB8
A
575 577Right-handed 310
Helix 18
AB9
A
611 621Right-handed alpha
Helix 19
AC1
A
622 624Right-handed 310
Helix 20
AC2
A
636 640Right-handed 310
Helix 21
AC3
A
642 647Right-handed alpha
Helix 22
AC4
A
657 661Right-handed 310
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There are 13 sheets in PDB entry 5N1B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
6 8first strand
Strand 2
A
25 28parallel
Strand 3
A
76 80anti-parallel
Strand 4
A
48 51anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
104 119parallel
Strand 3
A
90 97anti-parallel
Strand 4
A
39 44anti-parallel
Strand 5
A
68 69anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
15 20first strand
Strand 2
A
104 119parallel
Strand 3
A
181 189anti-parallel
Strand 4
A
243 253anti-parallel
Strand 5
A
211 216anti-parallel
Strand 6
A
226 229anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
148 150first strand
Strand 2
A
282 293parallel
Strand 3
A
264 273anti-parallel
Strand 4
A
197 202anti-parallel
Strand 5
A
235 238anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
333 337first strand
Strand 2
A
305 311parallel
Strand 3
A
648 651anti-parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
352 359first strand
Strand 2
A
362 369anti-parallel
Strand 3
A
390 393parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
410 412first strand
Strand 2
A
428 432anti-parallel
Strand 3
A
460 463parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
416 418first strand
Strand 2
A
421 423anti-parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
476 480first strand
Strand 2
A
487 493anti-parallel
Strand 3
A
564 568parallel
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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
513 514first strand
Strand 2
A
524 525anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
571 573first strand
Strand 2
A
579 581anti-parallel
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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
590 592first strand
Strand 2
A
595 599anti-parallel
Strand 3
A
626 630parallel
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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
605 606first strand
Strand 2
A
609 610anti-parallel
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