Analysis of interatomic Contacts of Structural Units in PDB entry:
5N1Q

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 5N1Q entry

There are 8 chains in PDB entry 5N1Q (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 5	LYS 260
A	ALA 262	ARG 274
A	SER 276	SER 402
A	ARG 404	TYR 447
A	TYR 449	LYS 553
B	VAL 2	ILE 443
C	ALA 2	LEU 261
D	LYS 5	SER 36

There are143 helices in PDB entry 5N1Q. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	16	Right-handed alpha
Helix 2	AA2	A	31	35	Right-handed 310
Helix 3	AA3	A	36	48	Right-handed alpha
Helix 4	AA4	A	48	54	Right-handed alpha
Helix 5	AA5	A	88	94	Right-handed 310
Helix 6	AA6	A	95	107	Right-handed alpha
Helix 7	AA7	A	113	123	Right-handed alpha
Helix 8	AA8	A	129	144	Right-handed alpha
Helix 9	AA9	A	158	162	Right-handed 310
Helix 10	AB1	A	173	180	Right-handed alpha
Helix 11	AB2	A	187	192	Right-handed alpha
Helix 12	AB3	A	193	205	Right-handed alpha
Helix 13	AB4	A	215	222	Right-handed alpha
Helix 14	AB5	A	225	243	Right-handed alpha
Helix 15	AB6	A	251	261	Right-handed alpha
Helix 16	AB7	A	272	276	Right-handed 310
Helix 17	AB8	A	281	285	Right-handed 310
Helix 18	AB9	A	286	294	Right-handed alpha
Helix 19	AC1	A	295	300	Right-handed alpha
Helix 20	AC2	A	302	319	Right-handed alpha
Helix 21	AC3	A	333	339	Right-handed alpha
Helix 22	AC4	A	344	361	Right-handed alpha
Helix 23	AC5	A	369	391	Right-handed alpha
Helix 24	AC6	A	391	398	Right-handed alpha
Helix 25	AC7	A	400	421	Right-handed alpha
Helix 26	AC8	A	422	442	Right-handed alpha
Helix 27	AC9	A	450	455	Right-handed alpha
Helix 28	AD1	A	455	461	Right-handed alpha
Helix 29	AD2	A	470	474	Right-handed 310
Helix 30	AD3	A	478	482	Right-handed 310
Helix 31	AD4	A	487	502	Right-handed alpha
Helix 32	AD5	A	509	516	Right-handed alpha
Helix 33	AD6	A	527	537	Right-handed alpha
Helix 34	AD7	A	546	550	Right-handed 310
Helix 35	AD8	B	25	28	Right-handed 310
Helix 36	AD9	B	32	44	Right-handed alpha
Helix 37	AE1	B	50	60	Right-handed alpha
Helix 38	AE2	B	81	94	Right-handed alpha
Helix 39	AE3	B	117	123	Right-handed alpha
Helix 40	AE4	B	128	147	Right-handed alpha
Helix 41	AE5	B	149	151	Right-handed 310
Helix 42	AE6	B	152	162	Right-handed alpha
Helix 43	AE7	B	181	185	Right-handed 310
Helix 44	AE8	B	190	194	Right-handed 310
Helix 45	AE9	B	196	204	Right-handed alpha
Helix 46	AF1	B	207	226	Right-handed alpha
Helix 47	AF2	B	230	232	Right-handed 310
Helix 48	AF3	B	233	246	Right-handed alpha
Helix 49	AF4	B	247	249	Right-handed 310
Helix 50	AF5	B	250	258	Right-handed alpha
Helix 51	AF6	B	263	278	Right-handed alpha
Helix 52	AF7	B	298	322	Right-handed alpha
Helix 53	AF8	B	323	325	Right-handed 310
Helix 54	AF9	B	326	343	Right-handed alpha
Helix 55	AG1	B	346	349	Right-handed 310
Helix 56	AG2	B	350	362	Right-handed alpha
Helix 57	AG3	B	371	375	Right-handed 310
Helix 58	AG4	B	389	400	Right-handed alpha
Helix 59	AG5	B	407	412	Right-handed alpha
Helix 60	AG6	B	412	420	Right-handed alpha
Helix 61	AG7	B	422	427	Right-handed alpha
Helix 62	AG8	B	427	440	Right-handed alpha
Helix 63	AG9	C	12	23	Right-handed alpha
Helix 64	AH1	C	35	44	Right-handed alpha
Helix 65	AH2	C	69	73	Right-handed 310
Helix 66	AH3	C	76	81	Right-handed alpha
Helix 67	AH4	C	100	112	Right-handed alpha
Helix 68	AH5	C	130	140	Right-handed alpha
Helix 69	AH6	C	210	218	Right-handed alpha
Helix 70	AH7	C	227	230	Right-handed 310
Helix 71	AH8	C	231	251	Right-handed alpha
Helix 72	AH9	C	253	261	Right-handed alpha
Helix 73	AI1	D	8	16	Right-handed alpha
Helix 74	AI2	D	31	35	Right-handed 310
Helix 75	AI3	D	36	53	Right-handed alpha
Helix 76	AI4	D	88	94	Right-handed 310
Helix 77	AI5	D	95	107	Right-handed alpha
Helix 78	AI6	D	113	123	Right-handed alpha
Helix 79	AI7	D	129	144	Right-handed alpha
Helix 80	AI8	D	158	162	Right-handed 310
Helix 81	AI9	D	173	180	Right-handed alpha
Helix 82	AJ1	D	187	192	Right-handed alpha
Helix 83	AJ2	D	193	205	Right-handed alpha
Helix 84	AJ3	D	215	222	Right-handed alpha
Helix 85	AJ4	D	225	243	Right-handed alpha
Helix 86	AJ5	D	251	261	Right-handed alpha
Helix 87	AJ6	D	272	276	Right-handed 310
Helix 88	AJ7	D	281	285	Right-handed 310
Helix 89	AJ8	D	286	294	Right-handed alpha
Helix 90	AJ9	D	295	300	Right-handed alpha
Helix 91	AK1	D	302	319	Right-handed alpha
Helix 92	AK2	D	333	339	Right-handed alpha
Helix 93	AK3	D	344	361	Right-handed alpha
Helix 94	AK4	D	369	391	Right-handed alpha
Helix 95	AK5	D	391	398	Right-handed alpha
Helix 96	AK6	D	400	421	Right-handed alpha
Helix 97	AK7	D	422	442	Right-handed alpha
Helix 98	AK8	D	450	455	Right-handed alpha
Helix 99	AK9	D	455	461	Right-handed alpha
Helix 100	AL1	D	470	474	Right-handed 310
Helix 101	AL2	D	478	482	Right-handed 310
Helix 102	AL3	D	487	502	Right-handed alpha
Helix 103	AL4	D	509	516	Right-handed alpha
Helix 104	AL5	D	527	537	Right-handed alpha
Helix 105	AL6	D	546	550	Right-handed 310
Helix 106	AL7	E	25	28	Right-handed 310
Helix 107	AL8	E	32	44	Right-handed alpha
Helix 108	AL9	E	50	60	Right-handed alpha
Helix 109	AM1	E	81	94	Right-handed alpha
Helix 110	AM2	E	117	123	Right-handed alpha
Helix 111	AM3	E	128	147	Right-handed alpha
Helix 112	AM4	E	149	151	Right-handed 310
Helix 113	AM5	E	152	162	Right-handed alpha
Helix 114	AM6	E	181	185	Right-handed 310
Helix 115	AM7	E	190	194	Right-handed 310
Helix 116	AM8	E	196	204	Right-handed alpha
Helix 117	AM9	E	207	226	Right-handed alpha
Helix 118	AN1	E	230	232	Right-handed 310
Helix 119	AN2	E	233	246	Right-handed alpha
Helix 120	AN3	E	247	249	Right-handed 310
Helix 121	AN4	E	250	258	Right-handed alpha
Helix 122	AN5	E	263	278	Right-handed alpha
Helix 123	AN6	E	298	322	Right-handed alpha
Helix 124	AN7	E	323	325	Right-handed 310
Helix 125	AN8	E	326	343	Right-handed alpha
Helix 126	AN9	E	346	349	Right-handed 310
Helix 127	AO1	E	350	362	Right-handed alpha
Helix 128	AO2	E	371	375	Right-handed 310
Helix 129	AO3	E	389	400	Right-handed alpha
Helix 130	AO4	E	407	412	Right-handed alpha
Helix 131	AO5	E	412	420	Right-handed alpha
Helix 132	AO6	E	422	427	Right-handed alpha
Helix 133	AO7	E	427	440	Right-handed alpha
Helix 134	AO8	F	12	23	Right-handed alpha
Helix 135	AO9	F	35	44	Right-handed alpha
Helix 136	AP1	F	69	73	Right-handed 310
Helix 137	AP2	F	76	81	Right-handed alpha
Helix 138	AP3	F	100	112	Right-handed alpha
Helix 139	AP4	F	130	140	Right-handed alpha
Helix 140	AP5	F	210	218	Right-handed alpha
Helix 141	AP6	F	227	230	Right-handed 310
Helix 142	AP7	F	231	251	Right-handed alpha
Helix 143	AP8	F	253	261	Right-handed alpha

There are 14 sheets in PDB entry 5N1Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	75	77	first strand
Strand 2	A	84	86	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	166	171	first strand
Strand 2	A	208	213	anti-parallel
Strand 3	A	108	112	anti-parallel
Strand 4	A	264	265	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	7	11	first strand
Strand 2	B	17	23	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	106	first strand
Strand 2	B	111	115	anti-parallel
Strand 3	B	45	49	anti-parallel
Strand 4	B	175	176	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	281	286	first strand
Strand 2	B	292	296	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	116	119	first strand
Strand 2	C	124	129	anti-parallel
Strand 3	C	85	92	anti-parallel
Strand 4	C	152	154	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	179	182	first strand
Strand 2	C	187	192	anti-parallel
Strand 3	C	198	204	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	75	77	first strand
Strand 2	D	84	86	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	166	171	first strand
Strand 2	D	208	213	anti-parallel
Strand 3	D	108	112	anti-parallel
Strand 4	D	264	265	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	7	11	first strand
Strand 2	E	17	23	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	102	106	first strand
Strand 2	E	111	115	anti-parallel
Strand 3	E	45	49	anti-parallel
Strand 4	E	175	176	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	281	286	first strand
Strand 2	E	292	296	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	116	119	first strand
Strand 2	F	124	129	anti-parallel
Strand 3	F	85	92	anti-parallel
Strand 4	F	152	154	anti-parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	179	182	first strand
Strand 2	F	187	192	anti-parallel
Strand 3	F	198	204	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 5N1Q

Analysis of interatomic Contacts of Structural Units in PDB entry:
5N1Q