Analysis of interatomic Contacts of Structural Units in PDB entry:
5N1T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 5N1T entry

There are 5 chains in PDB entry 5N1T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 33ARG 192
A
 PRO 194GLY 425
B
 ASP 1HIS 75
M
 HIS 1ALA 127
W
 HIS 1GLY 125
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 20 helices in PDB entry 5N1T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
42 56Right-handed alpha
Helix 2
AA2
A
75 81Right-handed alpha
Helix 3
AA3
A
86 88Right-handed 310
Helix 4
AA4
A
94 99Right-handed alpha
Helix 5
AA5
A
149 154Right-handed 310
Helix 6
AA6
A
163 176Right-handed alpha
Helix 7
AA7
A
195 212Right-handed alpha
Helix 8
AA8
A
228 240Right-handed alpha
Helix 9
AA9
A
248 252Right-handed 310
Helix 10
AB1
A
286 292Right-handed alpha
Helix 11
AB2
A
320 323Right-handed 310
Helix 12
AB3
A
331 351Right-handed alpha
Helix 13
AB4
A
401 425Right-handed alpha
Helix 14
AB5
B
2 16Right-handed alpha
Helix 15
AB6
B
17 20Right-handed 310
Helix 16
AB7
B
32 46Right-handed alpha
Helix 17
AB8
B
52 58Right-handed alpha
Helix 18
AB9
B
61 75Right-handed alpha
Helix 19
AC1
M
51 61Right-handed alpha
Helix 20
AC2
W
51 60Right-handed alpha
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There are 12 sheets in PDB entry 5N1T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 105first strand
Strand 2
A
60 64parallel
Strand 3
A
35 39parallel
Strand 4
A
131 134parallel
Strand 5
A
316 318parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 71first strand
Strand 2
A
90 92anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
109 113first strand
Strand 2
A
118 121anti-parallel
Strand 3
A
126 128anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 140first strand
Strand 2
A
283 285anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
244 247first strand
Strand 2
A
216 220parallel
Strand 3
A
181 185parallel
Strand 4
A
276 279parallel
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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
257 259first strand
Strand 2
A
264 267anti-parallel
Strand 3
A
270 273anti-parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 369first strand
Strand 2
A
372 382anti-parallel
Strand 3
A
387 389anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
360 369first strand
Strand 2
A
372 382anti-parallel
Strand 3
A
394 395anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
4 8first strand
Strand 2
M
21 26anti-parallel
Strand 3
M
86 90anti-parallel
Strand 4
M
77 79anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
M
13 14first strand
Strand 2
M
113 122parallel
Strand 3
M
98 107anti-parallel
Strand 4
M
36 42anti-parallel
Strand 5
M
72 74anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
4 8first strand
Strand 2
W
21 31anti-parallel
Strand 3
W
83 90anti-parallel
Strand 4
W
77 79anti-parallel
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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
W
13 14first strand
Strand 2
W
113 122parallel
Strand 3
W
98 107anti-parallel
Strand 4
W
36 42anti-parallel
Strand 5
W
72 73anti-parallel
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